G. gallus Gene: TRIM13 - ENSGALG00000017011 - Gallus gallus (chicken)

General information

Ensembl IDENSGALG00000017011
NameTRIM13
Descriptiontripartite motif containing 13 [Source:HGNC Symbol;Acc:HGNC:9976]
OrganismGallus gallus (chicken)
Synonym(s)dleu5, leu5, rfp2, rnf77
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
5.40e3
  • 5.40e3
66.49
  • 66.49
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
5.90e3
  • 5.90e3
63.37
  • 63.37
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
6.77e3
  • 6.77e3
57.95
  • 57.95
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
  • GgalDv:00000081-year-old chicken stage (chicken)
6.83e3
  • 6.83e3
  • 7.75e3
57.61
  • 57.61
  • 51.86
AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0000113post-juvenile adult stage
6.83e3
  • 6.83e3
57.57
  • 57.57
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
6.85e3
  • 6.85e3
57.49
  • 57.49
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • GgalDv:00000081-year-old chicken stage (chicken)
6.94e3
  • 6.94e3
  • 7.58e3
56.93
  • 56.93
  • 52.95
AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0000113post-juvenile adult stage
6.98e3
  • 6.98e3
56.64
  • 56.64
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0034919juvenile stage
7.13e3
  • 7.13e3
55.71
  • 55.71
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • GgalDv:00000081-year-old chicken stage (chicken)
7.16e3
  • 7.16e3
  • 8.18e3
55.57
  • 55.57
  • 49.22
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
  • GgalDv:00000081-year-old chicken stage (chicken)
7.33e3
  • 7.33e3
  • 8.71e3
54.48
  • 54.48
  • 45.93
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • GgalDv:00000081-year-old chicken stage (chicken)
7.68e3
  • 7.68e3
  • 9.30e3
52.29
  • 52.29
  • 42.27
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
7.79e3
  • 7.79e3
51.66
  • 51.66
AEIR
  • AEIR
UBERON:0002037cerebellum
  • GgalDv:00000081-year-old chicken stage (chicken)
7.82e3
  • 7.82e3
51.46
  • 51.46
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Sauria1 species1 geneCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSGALG00000017011.

Cross-references

EnsemblENSGALG00000017011 (TRIM13)
HGNCHGNC:9976 (TRIM13)
EMBLAADN03000560
Uniprot/SPTREMBLF1NV67, F1NV67_CHICK

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