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M. mulatta Gene: SLC6A1 - ENSMMUG00000005917 - Macaca mulatta (macaque)

General information

Ensembl IDENSMMUG00000005917
NameSLC6A1
Descriptionsolute carrier family 6 (neurotransmitter transporter), member 1 [Source:HGNC Symbol;Acc:HGNC:11042]
OrganismMacaca mulatta (macaque)
Synonym(s)gabathg, gabatr, gat1
Orthologs(s)15 orthologs
Paralog(s)15 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
559
  • 559
97.97
  • 97.97
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • MmulDv:0000046newborn stage (macaque)
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
632
  • 632
  • 853
  • 898
97.70
  • 97.70
  • 96.90
  • 96.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • MmulDv:0000046newborn stage (macaque)
638
  • 638
  • 745
  • 850
97.68
  • 97.68
  • 97.29
  • 96.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
697
  • 697
97.47
  • 97.47
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018241prime adult stage
1.03e3
  • 1.03e3
96.25
  • 96.25
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
1.07e3
  • 1.07e3
96.13
  • 96.13
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmulDv:00000062-month-old stage (macaque)
1.37e3
  • 1.37e3
95.03
  • 95.03
AEIR
  • AEIR
UBERON:0002107liver
  • MmulDv:00000062-month-old stage (macaque)
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.56e3
  • 2.56e3
  • 4.14e3
  • 5.33e3
90.69
  • 90.69
  • 84.94
  • 80.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000104life cycle
5.01e3
  • 5.01e3
81.77
  • 81.77
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.05e4
  • 1.05e4
  • 1.76e4
61.71
  • 61.71
  • 35.94
AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.19e4
  • 1.19e4
56.86
  • 56.86
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.36e4
  • 1.36e4
  • 1.49e4
50.43
  • 50.43
  • 45.82
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • MmulDv:00000062-month-old stage (macaque)
1.37e4
  • 1.37e4
  • 1.40e4
  • 1.51e4
50.11
  • 50.11
  • 49.14
  • 45.05
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
45.05
  • 45.05
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0000104life cycle
1.54e4
  • 1.54e4
43.96
  • 43.96
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
1.55e4
  • 1.55e4
43.58
  • 43.58
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.57e4
  • 1.57e4
42.95
  • 42.95
AEIR
  • AEIR
UBERON:0005386olfactory segment of nasal mucosa
  • UBERON:0000104life cycle
1.64e4
  • 1.64e4
40.51
  • 40.51
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.75e4
  • 1.75e4
36.21
  • 36.21
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.89e4
  • 1.89e4
31.33
  • 31.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression

Orthology information comes from OMA : ENSMMUG00000005917.

Paralogs (same species)

Cross-references

EnsemblENSMMUG00000005917 (SLC6A1)
HGNCHGNC:11042 (SLC6A1)
EMBLJH290780, JU319578
Uniprot/SPTREMBLF6WVM8, F6WVM8_MACMU

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