We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

M. domestica Gene: LRRC40 - ENSMODG00000000604 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000000604
NameLRRC40
Descriptionleucine rich repeat containing 40 [Source:HGNC Symbol;Acc:HGNC:26004]
OrganismMonodelphis domestica (opossum)
Synonym(s)flj20331
Orthologs(s)24 orthologs
Paralog(s)280 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
3.93e3
  • 3.93e3
  • 4.70e3
  • 4.87e3
81.85
  • 81.85
  • 78.29
  • 77.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
4.15e3
  • 4.15e3
80.85
  • 80.85
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
4.17e3
  • 4.17e3
80.76
  • 80.76
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
4.43e3
  • 4.43e3
  • 4.74e3
  • 5.22e3
79.57
  • 79.57
  • 78.10
  • 75.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
5.24e3
  • 5.24e3
75.81
  • 75.81
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.81e3
  • 5.81e3
  • 7.38e3
  • 7.50e3
73.19
  • 73.19
  • 65.93
  • 65.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.09e3
  • 6.09e3
  • 6.24e3
  • 6.42e3
71.87
  • 71.87
  • 71.20
  • 70.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
6.52e3
  • 6.52e3
  • 8.00e3
69.90
  • 69.90
  • 63.07
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
6.65e3
  • 6.65e3
  • 7.10e3
69.31
  • 69.31
  • 67.21
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
7.16e3
  • 7.16e3
  • 7.77e3
  • 8.01e3
66.96
  • 66.96
  • 64.14
  • 63.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
7.51e3
  • 7.51e3
65.34
  • 65.34
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
7.74e3
  • 7.74e3
  • 9.89e3
64.28
  • 64.28
  • 54.35
AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
7.88e3
  • 7.88e3
63.61
  • 63.61
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
8.20e3
  • 8.20e3
62.14
  • 62.14
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
8.43e3
  • 8.43e3
61.07
  • 61.07
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
8.48e3
  • 8.48e3
60.87
  • 60.87
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
8.73e3
  • 8.73e3
59.71
  • 59.71
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
9.02e3
  • 9.02e3
58.37
  • 58.37
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
9.78e3
  • 9.78e3
  • 1.01e4
54.87
  • 54.87
  • 53.28
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.02e4
  • 1.02e4
52.72
  • 52.72
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
1.17e4
  • 1.17e4
45.78
  • 45.78
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSMODG00000000604.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota280 genesCompare expression

Paralogy information comes from OMA : ENSMODG00000000604.

Cross-references

EnsemblENSMODG00000000604 (LRRC40)
HGNCHGNC:26004 (LRRC40)
Uniprot/SPTREMBLF6TB99, F6TB99_MONDO

Do not show this banner again