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M. domestica Gene: CPSF4 - ENSMODG00000001367 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000001367
NameCPSF4
Descriptioncleavage and polyadenylation specific factor 4 [Source:HGNC Symbol;Acc:HGNC:2327]
OrganismMonodelphis domestica (opossum)
Synonym(s)cpsf30, nar
Orthologs(s)21 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
2.13e3
  • 2.13e3
90.16
  • 90.16
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
2.29e3
  • 2.29e3
89.43
  • 89.43
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
3.09e3
  • 3.09e3
  • 3.56e3
  • 3.66e3
85.76
  • 85.76
  • 83.59
  • 83.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
3.35e3
  • 3.35e3
  • 5.55e3
  • 6.61e3
84.56
  • 84.56
  • 74.38
  • 69.50
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
4.21e3
  • 4.21e3
80.55
  • 80.55
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
4.22e3
  • 4.22e3
80.51
  • 80.51
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
4.84e3
  • 4.84e3
  • 5.03e3
77.68
  • 77.68
  • 76.78
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
4.90e3
  • 4.90e3
  • 6.36e3
77.39
  • 77.39
  • 70.63
AEIR
  • AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
5.01e3
  • 5.01e3
76.89
  • 76.89
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
5.15e3
  • 5.15e3
  • 5.44e3
76.25
  • 76.25
  • 74.90
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
5.16e3
  • 5.16e3
  • 5.62e3
  • 6.48e3
76.18
  • 76.18
  • 74.04
  • 70.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
5.17e3
  • 5.17e3
76.15
  • 76.15
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
5.26e3
  • 5.26e3
75.71
  • 75.71
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
5.54e3
  • 5.54e3
74.42
  • 74.42
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
5.62e3
  • 5.62e3
74.05
  • 74.05
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.67e3
  • 5.67e3
  • 5.75e3
  • 8.11e3
73.84
  • 73.84
  • 73.44
  • 62.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
5.69e3
  • 5.69e3
73.72
  • 73.72
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
5.78e3
  • 5.78e3
73.32
  • 73.32
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
5.80e3
  • 5.80e3
  • 6.69e3
73.25
  • 73.25
  • 69.13
AEIR
  • AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
5.80e3
  • 5.80e3
73.25
  • 73.25
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
5.80e3
  • 5.80e3
  • 6.62e3
  • 7.11e3
73.22
  • 73.22
  • 69.43
  • 67.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
6.92e3
  • 6.92e3
68.06
  • 68.06
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria21 species21 genesCompare expression

Orthology information comes from OMA : ENSMODG00000001367.

Cross-references

EnsemblENSMODG00000001367 (CPSF4)
HGNCHGNC:2327 (CPSF4)
Uniprot/SPTREMBLF7FVV8, F7FVV8_MONDO

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