We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

M. domestica Gene: COL2A1 - ENSMODG00000001752 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000001752
NameCOL2A1
Descriptioncollagen, type II, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2200]
OrganismMonodelphis domestica (opossum)
Synonym(s)aom, sedc, stl1
Orthologs(s)18 orthologs
Paralog(s)280 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
298
  • 298
98.63
  • 98.63
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.29e3
  • 1.29e3
94.06
  • 94.06
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.17e3
  • 2.17e3
  • 1.46e4
  • 1.50e4
89.99
  • 89.99
  • 32.47
  • 30.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
2.25e3
  • 2.25e3
89.62
  • 89.62
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
5.82e3
  • 5.82e3
  • 1.03e4
73.12
  • 73.12
  • 52.44
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
9.36e3
  • 9.36e3
  • 1.24e4
  • 1.29e4
56.78
  • 56.78
  • 42.70
  • 40.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.04e4
  • 1.04e4
51.86
  • 51.86
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.20e4
  • 1.20e4
44.63
  • 44.63
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.22e4
  • 1.22e4
43.50
  • 43.50
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.30e4
  • 1.30e4
39.91
  • 39.91
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
37.99
  • 37.99
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
34.61
  • 34.61
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
31.67
  • 31.67
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.67e4
  • 1.67e4
  • 1.70e4
22.69
  • 22.69
  • 21.48
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSMODG00000001752.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression
Bilateria4 genesCompare expression
Eukaryota280 genesCompare expression

Paralogy information comes from OMA : ENSMODG00000001752.

Cross-references

EnsemblENSMODG00000001752 (COL2A1)
HGNCHGNC:2200 (COL2A1)
Uniprot/SPTREMBLH9H5Y2, H9H5Y2_MONDO

Do not show this banner again