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M. domestica Gene: SF3B6 - ENSMODG00000002144 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000002144
NameSF3B6
Descriptionsplicing factor 3b subunit 6 [Source:HGNC Symbol;Acc:HGNC:30096]
OrganismMonodelphis domestica (opossum)
Synonym(s)cgi-110, ht006, p14, sap14a, sf3b14a
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.17e3
  • 1.17e3
  • 1.98e3
  • 2.66e3
94.62
  • 94.62
  • 90.84
  • 87.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
1.25e3
  • 1.25e3
94.24
  • 94.24
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.53e3
  • 1.53e3
  • 1.76e3
92.95
  • 92.95
  • 91.87
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.96e3
  • 1.96e3
90.95
  • 90.95
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
2.08e3
  • 2.08e3
90.42
  • 90.42
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
2.22e3
  • 2.22e3
  • 4.39e3
89.77
  • 89.77
  • 79.72
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.30e3
  • 2.30e3
  • 3.49e3
  • 5.01e3
89.37
  • 89.37
  • 83.88
  • 76.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.34e3
  • 2.34e3
  • 3.70e3
  • 7.97e3
89.20
  • 89.20
  • 82.92
  • 63.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
2.43e3
  • 2.43e3
88.80
  • 88.80
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
2.46e3
  • 2.46e3
  • 3.71e3
88.65
  • 88.65
  • 82.89
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
2.48e3
  • 2.48e3
88.55
  • 88.55
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
2.61e3
  • 2.61e3
87.96
  • 87.96
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
2.62e3
  • 2.62e3
87.89
  • 87.89
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
2.83e3
  • 2.83e3
86.95
  • 86.95
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
2.93e3
  • 2.93e3
86.48
  • 86.48
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
3.07e3
  • 3.07e3
85.84
  • 85.84
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
3.13e3
  • 3.13e3
  • 4.13e3
  • 5.67e3
85.54
  • 85.54
  • 80.95
  • 73.82
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
3.71e3
  • 3.71e3
  • 4.64e3
  • 4.93e3
82.88
  • 82.88
  • 78.60
  • 77.25
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
6.36e3
  • 6.36e3
70.62
  • 70.62
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
6.91e3
  • 6.91e3
68.12
  • 68.12
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
7.14e3
  • 7.14e3
  • 7.34e3
67.03
  • 67.03
  • 66.13
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSMODG00000002144.

Cross-references

EnsemblENSMODG00000002144 (SF3B6)
HGNCHGNC:30096 (SF3B6)
Uniprot/SPTREMBLH9H5Z7, H9H5Z7_MONDO

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