M. domestica Gene: COL8A1 - ENSMODG00000002306 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000002306
NameCOL8A1
Descriptioncollagen, type VIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2215]
OrganismMonodelphis domestica (opossum)
Synonym(s)c3orf7, mgc9568
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
4.67e3
  • 4.67e3
78.46
  • 78.46
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
4.94e3
  • 4.94e3
  • 6.97e3
  • 7.51e3
77.21
  • 77.21
  • 67.84
  • 65.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
7.53e3
  • 7.53e3
65.26
  • 65.26
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
7.64e3
  • 7.64e3
  • 1.42e4
  • 1.44e4
64.74
  • 64.74
  • 34.27
  • 33.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
9.79e3
  • 9.79e3
  • 1.02e4
54.82
  • 54.82
  • 53.01
AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
9.95e3
  • 9.95e3
54.04
  • 54.04
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.09e4
  • 1.09e4
49.82
  • 49.82
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.17e4
  • 1.17e4
  • 1.26e4
46.05
  • 46.05
  • 41.83
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
1.22e4
  • 1.22e4
  • 1.33e4
43.81
  • 43.81
  • 38.60
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
1.22e4
  • 1.22e4
43.45
  • 43.45
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.26e4
  • 1.26e4
42.04
  • 42.04
AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
1.27e4
  • 1.27e4
41.29
  • 41.29
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.27e4
  • 1.27e4
  • 1.36e4
41.20
  • 41.20
  • 37.35
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.31e4
  • 1.31e4
39.53
  • 39.53
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.35e4
  • 1.35e4
37.75
  • 37.75
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
  • 1.65e4
  • 1.75e4
35.34
  • 35.34
  • 24.02
  • 19.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.40e4
  • 1.40e4
  • 1.59e4
  • 1.59e4
35.16
  • 35.16
  • 26.54
  • 26.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.49e4
  • 1.49e4
31.12
  • 31.12
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.56e4
  • 1.56e4
28.01
  • 28.01
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.59e4
  • 1.59e4
26.50
  • 26.50
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression

Orthology information comes from OMA : ENSMODG00000002306.

Cross-references

EnsemblENSMODG00000002306 (COL8A1)
HGNCHGNC:2215 (COL8A1)
Uniprot/SPTREMBLF6YDU5, F6YDU5_MONDO

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