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M. domestica Gene: SMYD2 - ENSMODG00000003237 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000003237
NameSMYD2
DescriptionSET and MYND domain containing 2 [Source:HGNC Symbol;Acc:HGNC:20982]
OrganismMonodelphis domestica (opossum)
Synonym(s)hskm-b, kmt3c, zmynd14
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
896
  • 896
  • 4.72e3
95.87
  • 95.87
  • 78.20
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.29e3
  • 1.29e3
  • 1.69e3
  • 2.46e3
94.04
  • 94.04
  • 92.20
  • 88.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.79e3
  • 1.79e3
91.76
  • 91.76
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
1.97e3
  • 1.97e3
  • 2.35e3
90.92
  • 90.92
  • 89.15
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000068embryo stage
2.98e3
  • 2.98e3
  • 4.38e3
  • 4.69e3
86.25
  • 86.25
  • 79.77
  • 78.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
3.91e3
  • 3.91e3
81.97
  • 81.97
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
4.18e3
  • 4.18e3
80.72
  • 80.72
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
4.50e3
  • 4.50e3
79.21
  • 79.21
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
4.73e3
  • 4.73e3
78.16
  • 78.16
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
4.87e3
  • 4.87e3
77.51
  • 77.51
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
5.21e3
  • 5.21e3
  • 6.43e3
  • 7.62e3
75.94
  • 75.94
  • 70.34
  • 64.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
5.26e3
  • 5.26e3
75.73
  • 75.73
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
5.43e3
  • 5.43e3
  • 5.99e3
  • 6.34e3
74.94
  • 74.94
  • 72.36
  • 70.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
5.53e3
  • 5.53e3
  • 5.62e3
74.49
  • 74.49
  • 74.06
AEIR
  • AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
5.60e3
  • 5.60e3
74.14
  • 74.14
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
5.63e3
  • 5.63e3
74.00
  • 74.00
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
6.29e3
  • 6.29e3
70.98
  • 70.98
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
6.75e3
  • 6.75e3
  • 7.63e3
  • 9.56e3
68.82
  • 68.82
  • 64.76
  • 55.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
7.81e3
  • 7.81e3
63.97
  • 63.97
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
7.93e3
  • 7.93e3
63.40
  • 63.40
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
8.00e3
  • 8.00e3
63.08
  • 63.08
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
9.82e3
  • 9.82e3
  • 1.12e4
54.69
  • 54.69
  • 48.12
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSMODG00000003237.

Cross-references

EnsemblENSMODG00000003237 (SMYD2)
HGNCHGNC:20982 (SMYD2)
Uniprot/SPTREMBLF6THW6, F6THW6_MONDO

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