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M. domestica Gene: TMF1 - ENSMODG00000003468 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000003468
NameTMF1
DescriptionTATA element modulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:11870]
OrganismMonodelphis domestica (opossum)
Synonym(s)ara160, tmf
Orthologs(s)19 orthologs
Paralog(s)280 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
2.01e3
  • 2.01e3
  • 3.48e3
  • 3.82e3
90.72
  • 90.72
  • 83.92
  • 82.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
2.75e3
  • 2.75e3
87.30
  • 87.30
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.99e3
  • 2.99e3
  • 5.86e3
  • 6.84e3
86.22
  • 86.22
  • 72.94
  • 68.42
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
3.29e3
  • 3.29e3
84.80
  • 84.80
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
3.35e3
  • 3.35e3
  • 4.73e3
84.52
  • 84.52
  • 78.14
AEIR
  • AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
3.96e3
  • 3.96e3
81.74
  • 81.74
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
4.13e3
  • 4.13e3
  • 5.23e3
80.93
  • 80.93
  • 75.86
AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
4.20e3
  • 4.20e3
80.59
  • 80.59
AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
4.24e3
  • 4.24e3
80.42
  • 80.42
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
4.68e3
  • 4.68e3
  • 6.38e3
  • 6.54e3
78.38
  • 78.38
  • 70.53
  • 69.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
5.68e3
  • 5.68e3
  • 6.70e3
73.76
  • 73.76
  • 69.05
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
6.06e3
  • 6.06e3
  • 6.49e3
  • 7.08e3
72.05
  • 72.05
  • 70.04
  • 67.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
6.13e3
  • 6.13e3
71.72
  • 71.72
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
6.21e3
  • 6.21e3
71.34
  • 71.34
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
6.23e3
  • 6.23e3
71.25
  • 71.25
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
6.31e3
  • 6.31e3
  • 6.52e3
  • 8.81e3
70.87
  • 70.87
  • 69.93
  • 59.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
6.98e3
  • 6.98e3
67.77
  • 67.77
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
7.37e3
  • 7.37e3
65.98
  • 65.98
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
7.64e3
  • 7.64e3
64.71
  • 64.71
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
7.74e3
  • 7.74e3
  • 8.52e3
64.28
  • 64.28
  • 60.66
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
7.93e3
  • 7.93e3
63.39
  • 63.39
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
7.97e3
  • 7.97e3
63.20
  • 63.20
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
8.45e3
  • 8.45e3
60.99
  • 60.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSMODG00000003468.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota280 genesCompare expression

Paralogy information comes from OMA : ENSMODG00000003468.

Cross-references

EnsemblENSMODG00000003468 (TMF1)
HGNCHGNC:11870 (TMF1)
Uniprot/SPTREMBLF7DC44, F7DC44_MONDO

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