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M. domestica Gene: TMC4 - ENSMODG00000004029 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000004029
NameTMC4
Descriptiontransmembrane channel like 4 [Source:HGNC Symbol;Acc:HGNC:22998]
OrganismMonodelphis domestica (opossum)
Orthologs(s)16 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
2.07e3
  • 2.07e3
  • 2.46e3
90.46
  • 90.46
  • 88.65
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
2.27e3
  • 2.27e3
  • 2.52e3
89.51
  • 89.51
  • 88.38
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
2.30e3
  • 2.30e3
89.36
  • 89.36
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
3.15e3
  • 3.15e3
  • 4.81e3
  • 4.82e3
85.46
  • 85.46
  • 77.79
  • 77.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
3.85e3
  • 3.85e3
  • 5.52e3
  • 8.33e3
82.23
  • 82.23
  • 74.53
  • 61.54
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
3.91e3
  • 3.91e3
81.94
  • 81.94
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
4.00e3
  • 4.00e3
81.55
  • 81.55
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
6.26e3
  • 6.26e3
  • 6.94e3
71.09
  • 71.09
  • 67.96
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
7.17e3
  • 7.17e3
66.90
  • 66.90
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
7.99e3
  • 7.99e3
63.10
  • 63.10
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
8.34e3
  • 8.34e3
  • 9.16e3
  • 1.05e4
61.49
  • 61.49
  • 57.70
  • 51.56
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
8.39e3
  • 8.39e3
61.25
  • 61.25
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
8.95e3
  • 8.95e3
  • 1.16e4
  • 1.19e4
58.66
  • 58.66
  • 46.42
  • 44.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
9.59e3
  • 9.59e3
55.74
  • 55.74
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.02e4
  • 1.02e4
52.77
  • 52.77
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
1.11e4
  • 1.11e4
  • 1.15e4
48.92
  • 48.92
  • 46.86
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.13e4
  • 1.13e4
  • 1.21e4
  • 1.26e4
47.73
  • 47.73
  • 44.31
  • 41.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.28e4
  • 1.28e4
40.91
  • 40.91
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
33.83
  • 33.83
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.49e4
  • 1.49e4
31.18
  • 31.18
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
1.51e4
  • 1.51e4
30.39
  • 30.39
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSMODG00000004029.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota2 genesCompare expression

Paralogy information comes from OMA : ENSMODG00000004029.

Cross-references

EnsemblENSMODG00000004029 (TMC4)
HGNCHGNC:22998 (TMC4)
Uniprot/SPTREMBLF7CMG9, F7CMG9_MONDO, K7E2L5, K7E2L5_MONDO

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