M. domestica Gene: SPATA17 - ENSMODG00000004247 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000004247
NameSPATA17
Descriptionspermatogenesis associated 17 [Source:HGNC Symbol;Acc:HGNC:25184]
OrganismMonodelphis domestica (opossum)
Synonym(s)iqch
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
2.19e3
  • 2.19e3
  • 2.54e3
  • 2.67e3
89.91
  • 89.91
  • 88.26
  • 87.68
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
2.82e3
  • 2.82e3
87.01
  • 87.01
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
3.95e3
  • 3.95e3
81.75
  • 81.75
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
6.33e3
  • 6.33e3
  • 9.88e3
70.78
  • 70.78
  • 54.39
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
6.65e3
  • 6.65e3
  • 7.97e3
  • 1.09e4
69.30
  • 69.30
  • 63.23
  • 49.56
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.08e4
  • 1.08e4
50.19
  • 50.19
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
1.14e4
  • 1.14e4
  • 1.45e4
47.49
  • 47.49
  • 33.19
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
1.16e4
  • 1.16e4
  • 1.41e4
46.59
  • 46.59
  • 35.05
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
35.22
  • 35.22
AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
34.56
  • 34.56
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.47e4
  • 1.47e4
  • 1.48e4
  • 1.55e4
32.28
  • 32.28
  • 31.88
  • 28.29
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.54e4
  • 1.54e4
28.87
  • 28.87
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.61e4
  • 1.61e4
25.50
  • 25.50
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.62e4
  • 1.62e4
25.34
  • 25.34
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSMODG00000004247.

Cross-references

EnsemblENSMODG00000004247 (SPATA17)
HGNCHGNC:25184 (SPATA17)
Uniprot/SPTREMBLF6UB33, F6UB33_MONDO

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