We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

M. domestica Gene: SMARCD3 - ENSMODG00000004451 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000004451
NameSMARCD3
DescriptionSWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 [Source:HGNC Symbol;Acc:HGNC:11108]
OrganismMonodelphis domestica (opossum)
Synonym(s)baf60c, cracd3, rsc6p
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
478
  • 478
  • 615
97.80
  • 97.80
  • 97.17
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000068embryo stage
785
  • 785
  • 1.02e3
  • 1.11e3
96.38
  • 96.38
  • 95.30
  • 94.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
917
  • 917
95.77
  • 95.77
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
1.12e3
  • 1.12e3
94.81
  • 94.81
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.97e3
  • 1.97e3
90.91
  • 90.91
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
2.11e3
  • 2.11e3
  • 2.41e3
  • 2.62e3
90.26
  • 90.26
  • 88.88
  • 87.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
2.23e3
  • 2.23e3
  • 4.00e3
  • 4.53e3
89.72
  • 89.72
  • 81.55
  • 79.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
2.50e3
  • 2.50e3
88.45
  • 88.45
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
2.52e3
  • 2.52e3
88.36
  • 88.36
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
3.30e3
  • 3.30e3
  • 4.27e3
  • 4.55e3
84.76
  • 84.76
  • 80.30
  • 79.02
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
3.36e3
  • 3.36e3
84.51
  • 84.51
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
3.95e3
  • 3.95e3
81.75
  • 81.75
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
4.72e3
  • 4.72e3
78.22
  • 78.22
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
4.84e3
  • 4.84e3
77.67
  • 77.67
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
5.03e3
  • 5.03e3
  • 5.77e3
76.78
  • 76.78
  • 73.35
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
5.12e3
  • 5.12e3
  • 8.18e3
76.35
  • 76.35
  • 62.24
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
8.79e3
  • 8.79e3
59.40
  • 59.40
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
9.02e3
  • 9.02e3
58.35
  • 58.35
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.05e4
  • 1.05e4
  • 1.21e4
51.45
  • 51.45
  • 44.26
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.15e4
  • 1.15e4
  • 1.24e4
  • 1.25e4
47.01
  • 47.01
  • 42.91
  • 42.09
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSMODG00000004451.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Metazoa1 geneCompare expression

Paralogy information comes from OMA : ENSMODG00000004451.

Cross-references

EnsemblENSMODG00000004451 (SMARCD3)
HGNCHGNC:11108 (SMARCD3)
Uniprot/SPTREMBLF6R7T1, F6R7T1_MONDO

Do not show this banner again