M. domestica Gene: COL4A1 - ENSMODG00000004766 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000004766
NameCOL4A1
Descriptioncollagen, type IV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2202]
OrganismMonodelphis domestica (opossum)
Orthologs(s)17 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
361
  • 361
98.34
  • 98.34
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
740
  • 740
  • 1.86e3
96.59
  • 96.59
  • 91.42
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
840
  • 840
  • 948
  • 1.28e3
96.13
  • 96.13
  • 95.63
  • 94.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
922
  • 922
95.75
  • 95.75
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.04e3
  • 1.04e3
  • 1.31e3
  • 1.77e3
95.19
  • 95.19
  • 93.96
  • 91.82
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.28e3
  • 1.28e3
94.08
  • 94.08
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.42e3
  • 1.42e3
93.45
  • 93.45
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.44e3
  • 1.44e3
  • 2.26e3
93.37
  • 93.37
  • 89.56
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.70e3
  • 1.70e3
  • 8.87e3
  • 9.80e3
92.16
  • 92.16
  • 59.07
  • 54.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.84e3
  • 1.84e3
91.52
  • 91.52
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.92e3
  • 1.92e3
  • 2.07e3
91.16
  • 91.16
  • 90.45
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
2.70e3
  • 2.70e3
87.53
  • 87.53
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
2.81e3
  • 2.81e3
  • 4.04e3
87.05
  • 87.05
  • 81.33
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
3.10e3
  • 3.10e3
85.71
  • 85.71
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
5.97e3
  • 5.97e3
72.44
  • 72.44
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
6.24e3
  • 6.24e3
  • 6.26e3
  • 6.54e3
71.21
  • 71.21
  • 71.10
  • 69.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
8.64e3
  • 8.64e3
60.13
  • 60.13
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
9.00e3
  • 9.00e3
  • 9.85e3
  • 1.03e4
58.43
  • 58.43
  • 54.53
  • 52.51
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
9.24e3
  • 9.24e3
57.36
  • 57.36
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.08e4
  • 1.08e4
50.07
  • 50.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSMODG00000004766.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Bilateria2 genesCompare expression

Paralogy information comes from OMA : ENSMODG00000004766.

Cross-references

EnsemblENSMODG00000004766 (COL4A1)
HGNCHGNC:2202 (COL4A1)
Uniprot/SPTREMBLF6VPM2, F6VPM2_MONDO

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