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M. domestica Gene: PDLIM1 - ENSMODG00000005293 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000005293
NamePDLIM1
DescriptionPDZ and LIM domain 1 [Source:HGNC Symbol;Acc:HGNC:2067]
OrganismMonodelphis domestica (opossum)
Synonym(s)clim1, clp-36, clp36, hclim1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
395
  • 395
98.18
  • 98.18
AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
1.85e3
  • 1.85e3
91.47
  • 91.47
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.87e3
  • 1.87e3
91.38
  • 91.38
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
1.89e3
  • 1.89e3
  • 2.31e3
91.28
  • 91.28
  • 89.35
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
2.10e3
  • 2.10e3
90.33
  • 90.33
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
3.14e3
  • 3.14e3
  • 3.89e3
  • 5.06e3
85.50
  • 85.50
  • 82.05
  • 76.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
3.20e3
  • 3.20e3
85.21
  • 85.21
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
3.46e3
  • 3.46e3
84.02
  • 84.02
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
3.80e3
  • 3.80e3
  • 4.09e3
  • 6.35e3
82.46
  • 82.46
  • 81.13
  • 70.71
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
3.92e3
  • 3.92e3
  • 4.51e3
  • 4.54e3
81.92
  • 81.92
  • 79.19
  • 79.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
4.44e3
  • 4.44e3
  • 5.63e3
79.50
  • 79.50
  • 74.03
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.76e3
  • 5.76e3
  • 1.23e4
  • 1.28e4
73.39
  • 73.39
  • 43.42
  • 40.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
6.61e3
  • 6.61e3
  • 9.20e3
69.50
  • 69.50
  • 57.53
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
6.67e3
  • 6.67e3
69.22
  • 69.22
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
7.07e3
  • 7.07e3
67.38
  • 67.38
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
9.07e3
  • 9.07e3
58.13
  • 58.13
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
9.16e3
  • 9.16e3
57.74
  • 57.74
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
9.16e3
  • 9.16e3
57.71
  • 57.71
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.01e4
  • 1.01e4
  • 1.22e4
  • 1.23e4
53.54
  • 53.54
  • 43.71
  • 43.44
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.10e4
  • 1.10e4
49.03
  • 49.03
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.14e4
  • 1.14e4
  • 1.19e4
47.28
  • 47.28
  • 44.93
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
42.44
  • 42.44
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSMODG00000005293 (PDLIM1)
HGNCHGNC:2067 (PDLIM1)
Uniprot/SPTREMBLF7DMN3, F7DMN3_MONDO

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