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M. domestica Gene: USF1 - ENSMODG00000005443 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000005443
NameUSF1
Descriptionupstream transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:12593]
OrganismMonodelphis domestica (opossum)
Synonym(s)bhlhb11, mltfi, uef
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
969
  • 969
  • 1.67e3
  • 2.04e3
95.53
  • 95.53
  • 92.29
  • 90.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.12e3
  • 1.12e3
94.82
  • 94.82
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.24e3
  • 1.24e3
94.27
  • 94.27
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.27e3
  • 1.27e3
94.14
  • 94.14
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
1.28e3
  • 1.28e3
  • 1.42e3
94.08
  • 94.08
  • 93.47
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.46e3
  • 1.46e3
  • 1.87e3
  • 1.93e3
93.28
  • 93.28
  • 91.36
  • 91.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.59e3
  • 1.59e3
  • 1.88e3
92.65
  • 92.65
  • 91.31
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.71e3
  • 1.71e3
  • 2.29e3
  • 2.65e3
92.11
  • 92.11
  • 89.45
  • 87.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
2.04e3
  • 2.04e3
90.57
  • 90.57
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
2.09e3
  • 2.09e3
90.34
  • 90.34
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
2.22e3
  • 2.22e3
  • 2.36e3
89.76
  • 89.76
  • 89.13
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
2.36e3
  • 2.36e3
89.13
  • 89.13
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
2.43e3
  • 2.43e3
  • 2.60e3
88.77
  • 88.77
  • 88.01
AEIR
  • AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
2.49e3
  • 2.49e3
88.50
  • 88.50
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
2.60e3
  • 2.60e3
88.01
  • 88.01
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
2.61e3
  • 2.61e3
87.98
  • 87.98
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
2.67e3
  • 2.67e3
87.67
  • 87.67
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
2.79e3
  • 2.79e3
87.10
  • 87.10
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.86e3
  • 2.86e3
  • 3.10e3
  • 3.33e3
86.81
  • 86.81
  • 85.69
  • 84.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
3.18e3
  • 3.18e3
  • 3.49e3
  • 4.07e3
85.32
  • 85.32
  • 83.91
  • 81.20
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
3.51e3
  • 3.51e3
83.81
  • 83.81
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSMODG00000005443.

Cross-references

EnsemblENSMODG00000005443 (USF1)
HGNCHGNC:12593 (USF1)
Uniprot/SPTREMBLF6WR60, F6WR60_MONDO, F7D0G6, F7D0G6_MONDO

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