M. domestica Gene: TBP - ENSMODG00000005484 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000005484
NameTBP
DescriptionTATA-box binding protein [Source:HGNC Symbol;Acc:HGNC:11588]
OrganismMonodelphis domestica (opossum)
Synonym(s)gtf2d1, sca17, tfiid
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
495
  • 495
97.72
  • 97.72
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
538
  • 538
  • 679
  • 823
97.52
  • 97.52
  • 96.87
  • 96.21
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.11e3
  • 1.11e3
94.89
  • 94.89
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
2.13e3
  • 2.13e3
  • 2.14e3
90.16
  • 90.16
  • 90.14
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
2.14e3
  • 2.14e3
  • 2.64e3
  • 2.68e3
90.11
  • 90.11
  • 87.81
  • 87.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
2.18e3
  • 2.18e3
89.92
  • 89.92
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.20e3
  • 2.20e3
  • 4.09e3
  • 4.78e3
89.86
  • 89.86
  • 81.14
  • 77.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
2.24e3
  • 2.24e3
89.66
  • 89.66
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
2.42e3
  • 2.42e3
  • 3.50e3
88.81
  • 88.81
  • 83.86
AEIR
  • AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
2.51e3
  • 2.51e3
88.42
  • 88.42
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
2.81e3
  • 2.81e3
  • 3.49e3
87.03
  • 87.03
  • 83.89
AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
3.63e3
  • 3.63e3
83.26
  • 83.26
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
4.37e3
  • 4.37e3
79.85
  • 79.85
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
4.55e3
  • 4.55e3
  • 5.24e3
  • 5.28e3
79.00
  • 79.00
  • 75.83
  • 75.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
4.58e3
  • 4.58e3
78.86
  • 78.86
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
4.82e3
  • 4.82e3
77.73
  • 77.73
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.38e3
  • 5.38e3
  • 6.05e3
  • 6.68e3
75.17
  • 75.17
  • 72.06
  • 69.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
5.43e3
  • 5.43e3
74.93
  • 74.93
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
5.50e3
  • 5.50e3
74.60
  • 74.60
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
6.29e3
  • 6.29e3
70.95
  • 70.95
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
6.69e3
  • 6.69e3
  • 7.02e3
69.14
  • 69.14
  • 67.59
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
7.00e3
  • 7.00e3
67.67
  • 67.67
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species17 genesCompare expression
Euteleostomi17 species19 genesCompare expression

Orthology information comes from OMA : ENSMODG00000005484.

Cross-references

EnsemblENSMODG00000005484 (TBP)
HGNCHGNC:11588 (TBP)
Uniprot/SPTREMBLF7CFV3, F7CFV3_MONDO

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