M. domestica Gene: FMR1 - ENSMODG00000005550 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000005550
NameFMR1
Descriptionfragile X mental retardation 1 [Source:HGNC Symbol;Acc:HGNC:3775]
OrganismMonodelphis domestica (opossum)
Synonym(s)fmrp, fraxa, mgc87458, pof, pof1
Orthologs(s)18 orthologs
Paralog(s)280 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
2.98e3
  • 2.98e3
  • 3.30e3
  • 4.70e3
86.26
  • 86.26
  • 84.78
  • 78.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.28e3
  • 3.28e3
  • 3.94e3
  • 4.80e3
84.85
  • 84.85
  • 81.80
  • 77.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
3.70e3
  • 3.70e3
82.93
  • 82.93
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
3.80e3
  • 3.80e3
82.44
  • 82.44
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
4.21e3
  • 4.21e3
  • 4.79e3
  • 5.68e3
80.57
  • 80.57
  • 77.91
  • 73.79
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
4.86e3
  • 4.86e3
77.58
  • 77.58
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
5.23e3
  • 5.23e3
  • 5.29e3
75.85
  • 75.85
  • 75.60
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
5.28e3
  • 5.28e3
  • 5.75e3
  • 5.88e3
75.61
  • 75.61
  • 73.47
  • 72.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
5.49e3
  • 5.49e3
74.64
  • 74.64
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
5.92e3
  • 5.92e3
72.69
  • 72.69
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
6.01e3
  • 6.01e3
72.25
  • 72.25
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
6.13e3
  • 6.13e3
  • 7.84e3
71.69
  • 71.69
  • 63.79
AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
6.33e3
  • 6.33e3
70.78
  • 70.78
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
6.61e3
  • 6.61e3
  • 8.10e3
  • 8.72e3
69.47
  • 69.47
  • 62.60
  • 59.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
6.62e3
  • 6.62e3
69.45
  • 69.45
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
6.67e3
  • 6.67e3
69.19
  • 69.19
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
6.88e3
  • 6.88e3
  • 7.74e3
68.23
  • 68.23
  • 64.29
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
6.95e3
  • 6.95e3
67.91
  • 67.91
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
7.10e3
  • 7.10e3
67.23
  • 67.23
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
7.40e3
  • 7.40e3
65.85
  • 65.85
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
7.47e3
  • 7.47e3
  • 8.42e3
65.50
  • 65.50
  • 61.14
AEIR
  • AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
7.64e3
  • 7.64e3
64.73
  • 64.73
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSMODG00000005550.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Metazoa2 genesCompare expression
Eukaryota280 genesCompare expression

Paralogy information comes from OMA : ENSMODG00000005550.

Cross-references

EnsemblENSMODG00000005550 (FMR1)
HGNCHGNC:3775 (FMR1)
Uniprot/SPTREMBLF7FHC1, F7FHC1_MONDO

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