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M. domestica Gene: HMGB3 - ENSMODG00000005735 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000005735
NameHMGB3
Descriptionhigh mobility group box 3 [Source:HGNC Symbol;Acc:HGNC:5004]
OrganismMonodelphis domestica (opossum)
Synonym(s)hmg2a, hmg4, mgc90319
Orthologs(s)21 orthologs
Paralog(s)6 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
168
  • 168
99.23
  • 99.23
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
205
  • 205
99.06
  • 99.06
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
212
  • 212
  • 3.09e3
  • 3.14e3
99.03
  • 99.03
  • 85.74
  • 85.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
361
  • 361
  • 447
98.34
  • 98.34
  • 97.94
AEIR
  • AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
459
  • 459
97.89
  • 97.89
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
500
  • 500
  • 516
  • 708
97.70
  • 97.70
  • 97.62
  • 96.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
505
  • 505
  • 849
97.68
  • 97.68
  • 96.08
AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
667
  • 667
96.93
  • 96.93
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
686
  • 686
  • 2.32e3
96.84
  • 96.84
  • 89.30
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
773
  • 773
  • 1.94e3
  • 2.75e3
96.44
  • 96.44
  • 91.07
  • 87.29
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
824
  • 824
96.20
  • 96.20
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
938
  • 938
95.67
  • 95.67
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.19e3
  • 1.19e3
  • 2.32e3
  • 2.81e3
94.49
  • 94.49
  • 89.29
  • 87.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.54e3
  • 1.54e3
92.89
  • 92.89
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
1.65e3
  • 1.65e3
92.38
  • 92.38
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.69e3
  • 1.69e3
92.20
  • 92.20
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.87e3
  • 1.87e3
91.35
  • 91.35
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.97e3
  • 1.97e3
  • 2.50e3
  • 3.18e3
90.92
  • 90.92
  • 88.47
  • 85.32
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
2.66e3
  • 2.66e3
87.71
  • 87.71
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
3.52e3
  • 3.52e3
83.76
  • 83.76
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.63e3
  • 3.63e3
  • 4.00e3
83.26
  • 83.26
  • 81.54
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
5.41e3
  • 5.41e3
75.03
  • 75.03
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria12 species14 genesCompare expression
Mammalia13 species15 genesCompare expression
Amniota15 species17 genesCompare expression
Tetrapoda16 species18 genesCompare expression
Euteleostomi17 species20 genesCompare expression
Bilateria18 species21 genesCompare expression

Orthology information comes from OMA : ENSMODG00000005735.

Paralogs (same species)

Cross-references

EnsemblENSMODG00000005735 (HMGB3)
HGNCHGNC:5004 (HMGB3)
Uniprot/SPTREMBLF6QEC9, F6QEC9_MONDO

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