M. domestica Gene: VPS13B - ENSMODG00000006415 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000006415
NameVPS13B
Descriptionvacuolar protein sorting 13 homolog B (yeast) [Source:HGNC Symbol;Acc:HGNC:2183]
OrganismMonodelphis domestica (opossum)
Synonym(s)chs1, coh1
Orthologs(s)20 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
7.39e3
  • 7.39e3
  • 1.04e4
  • 1.13e4
65.87
  • 65.87
  • 51.85
  • 48.04
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
7.50e3
  • 7.50e3
65.36
  • 65.36
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
7.73e3
  • 7.73e3
  • 8.65e3
  • 9.09e3
64.31
  • 64.31
  • 60.09
  • 58.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
7.90e3
  • 7.90e3
  • 9.66e3
  • 9.98e3
63.54
  • 63.54
  • 55.42
  • 53.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
8.06e3
  • 8.06e3
  • 9.34e3
62.82
  • 62.82
  • 56.89
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
8.09e3
  • 8.09e3
  • 1.01e4
62.64
  • 62.64
  • 53.58
AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
8.72e3
  • 8.72e3
59.72
  • 59.72
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
8.91e3
  • 8.91e3
  • 9.12e3
58.87
  • 58.87
  • 57.88
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
8.92e3
  • 8.92e3
58.84
  • 58.84
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
8.97e3
  • 8.97e3
  • 9.47e3
58.57
  • 58.57
  • 56.28
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
9.32e3
  • 9.32e3
  • 9.86e3
  • 1.04e4
56.99
  • 56.99
  • 54.48
  • 51.79
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
9.40e3
  • 9.40e3
56.62
  • 56.62
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
9.48e3
  • 9.48e3
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
9.48e3
  • 9.48e3
56.23
  • 56.23
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
9.49e3
  • 9.49e3
  • 1.03e4
  • 1.06e4
56.21
  • 56.21
  • 52.35
  • 50.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
9.90e3
  • 9.90e3
54.29
  • 54.29
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.02e4
  • 1.02e4
53.11
  • 53.11
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.04e4
  • 1.04e4
52.11
  • 52.11
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.08e4
  • 1.08e4
50.22
  • 50.22
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.09e4
  • 1.09e4
49.56
  • 49.56
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.11e4
  • 1.11e4
48.75
  • 48.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria11 species11 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Bilateria20 species20 genesCompare expression

Orthology information comes from OMA : ENSMODG00000006415.

Cross-references

EnsemblENSMODG00000006415 (VPS13B)
HGNCHGNC:2183 (VPS13B)
Uniprot/SPTREMBLF7FCU7, F7FCU7_MONDO

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