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M. domestica Gene: SMC1B - ENSMODG00000007253 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000007253
NameSMC1B
Descriptionstructural maintenance of chromosomes 1B [Source:HGNC Symbol;Acc:HGNC:11112]
OrganismMonodelphis domestica (opossum)
Synonym(s)bk268h5, smc1l2
Orthologs(s)17 orthologs
Paralog(s)280 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
388
  • 388
  • 780
  • 1.25e3
98.21
  • 98.21
  • 96.40
  • 94.24
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.13e3
  • 1.13e3
94.78
  • 94.78
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.89e3
  • 1.89e3
91.29
  • 91.29
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
8.70e3
  • 8.70e3
  • 1.04e4
  • 1.19e4
59.83
  • 59.83
  • 52.06
  • 45.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.10e4
  • 1.10e4
  • 1.35e4
49.40
  • 49.40
  • 37.52
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.15e4
  • 1.15e4
47.01
  • 47.01
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.26e4
  • 1.26e4
  • 1.36e4
41.91
  • 41.91
  • 37.06
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.26e4
  • 1.26e4
41.73
  • 41.73
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.41e4
  • 1.41e4
  • 1.44e4
34.68
  • 34.68
  • 33.50
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
1.47e4
  • 1.47e4
  • 1.49e4
32.27
  • 32.27
  • 31.24
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.50e4
  • 1.50e4
30.61
  • 30.61
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.52e4
  • 1.52e4
30.05
  • 30.05
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.55e4
  • 1.55e4
28.31
  • 28.31
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.56e4
  • 1.56e4
28.13
  • 28.13
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.62e4
  • 1.62e4
  • 1.63e4
  • 1.75e4
25.36
  • 25.36
  • 24.82
  • 19.04
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression

Orthology information comes from OMA : ENSMODG00000007253.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota280 genesCompare expression

Paralogy information comes from OMA : ENSMODG00000007253.

Cross-references

EnsemblENSMODG00000007253 (SMC1B)
HGNCHGNC:11112 (SMC1B)
Uniprot/SPTREMBLF6VWI0, F6VWI0_MONDO, F6VWT2, F6VWT2_MONDO

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