M. domestica Gene: RTN3 - ENSMODG00000008519 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000008519
NameRTN3
Descriptionreticulon 3 [Source:HGNC Symbol;Acc:HGNC:10469]
OrganismMonodelphis domestica (opossum)
Synonym(s)asyip, hap, nspl2, nsplii, rtn3-a1
Orthologs(s)9 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
451
  • 451
  • 524
97.92
  • 97.92
  • 97.58
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
549
  • 549
  • 627
  • 1.34e3
97.47
  • 97.47
  • 97.11
  • 93.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
933
  • 933
95.70
  • 95.70
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.66e3
  • 1.66e3
92.35
  • 92.35
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.74e3
  • 1.74e3
91.99
  • 91.99
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.96e3
  • 1.96e3
  • 2.26e3
90.97
  • 90.97
  • 89.57
AEIR
  • AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
1.96e3
  • 1.96e3
90.97
  • 90.97
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.99e3
  • 1.99e3
90.83
  • 90.83
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
2.00e3
  • 2.00e3
90.78
  • 90.78
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
2.06e3
  • 2.06e3
90.48
  • 90.48
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
2.29e3
  • 2.29e3
  • 2.67e3
  • 3.42e3
89.45
  • 89.45
  • 87.66
  • 84.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
2.51e3
  • 2.51e3
88.44
  • 88.44
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
2.57e3
  • 2.57e3
  • 2.77e3
88.13
  • 88.13
  • 87.23
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.94e3
  • 2.94e3
  • 3.06e3
  • 3.42e3
86.44
  • 86.44
  • 85.87
  • 84.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.16e3
  • 3.16e3
  • 3.23e3
  • 3.96e3
85.43
  • 85.43
  • 85.10
  • 81.73
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
3.22e3
  • 3.22e3
85.15
  • 85.15
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
3.28e3
  • 3.28e3
  • 3.70e3
  • 4.15e3
84.87
  • 84.87
  • 82.91
  • 80.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
3.49e3
  • 3.49e3
83.88
  • 83.88
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.65e3
  • 3.65e3
  • 4.17e3
83.13
  • 83.13
  • 80.73
AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
4.09e3
  • 4.09e3
81.10
  • 81.10
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSMODG00000008519 (RTN3)
HGNCHGNC:10469 (RTN3)
Uniprot/SPTREMBLF6XGZ4, F6XGZ4_MONDO

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