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M. domestica Gene: TAF1D - ENSMODG00000008546 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000008546
NameTAF1D
DescriptionTATA-box binding protein associated factor, RNA polymerase I, D [Source:HGNC Symbol;Acc:HGNC:28759]
OrganismMonodelphis domestica (opossum)
Synonym(s)josd3, mgc5306, taf(i)41
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
1.50e3
  • 1.50e3
93.09
  • 93.09
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
1.55e3
  • 1.55e3
92.83
  • 92.83
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.80e3
  • 1.80e3
91.68
  • 91.68
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
2.00e3
  • 2.00e3
90.78
  • 90.78
AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
2.11e3
  • 2.11e3
90.24
  • 90.24
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000068embryo stage
2.43e3
  • 2.43e3
  • 6.95e3
  • 9.89e3
88.80
  • 88.80
  • 67.91
  • 54.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
2.56e3
  • 2.56e3
88.17
  • 88.17
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.73e3
  • 2.73e3
  • 2.74e3
  • 4.27e3
87.39
  • 87.39
  • 87.35
  • 80.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
3.24e3
  • 3.24e3
85.02
  • 85.02
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
3.33e3
  • 3.33e3
  • 3.54e3
84.62
  • 84.62
  • 83.68
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
4.60e3
  • 4.60e3
78.77
  • 78.77
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
4.92e3
  • 4.92e3
77.31
  • 77.31
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
4.95e3
  • 4.95e3
  • 7.73e3
77.15
  • 77.15
  • 64.32
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
5.44e3
  • 5.44e3
74.91
  • 74.91
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
6.18e3
  • 6.18e3
  • 6.91e3
  • 7.87e3
71.48
  • 71.48
  • 68.08
  • 63.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
6.29e3
  • 6.29e3
  • 7.61e3
  • 9.64e3
70.95
  • 70.95
  • 64.86
  • 55.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.32e3
  • 6.32e3
  • 7.40e3
  • 1.13e4
70.82
  • 70.82
  • 65.82
  • 47.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
7.15e3
  • 7.15e3
  • 7.78e3
66.99
  • 66.99
  • 64.07
AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
8.77e3
  • 8.77e3
59.49
  • 59.49
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
1.02e4
  • 1.02e4
  • 1.20e4
52.86
  • 52.86
  • 44.70
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.05e4
  • 1.05e4
51.74
  • 51.74
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.28e4
  • 1.28e4
41.11
  • 41.11
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
39.29
  • 39.29
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria12 species17 genesCompare expression
Mammalia13 species18 genesCompare expression
Tetrapoda14 species19 genesCompare expression

Orthology information comes from OMA : ENSMODG00000008546.

Cross-references

EnsemblENSMODG00000008546 (TAF1D)
HGNCHGNC:28759 (TAF1D)
Uniprot/SPTREMBLF7DGY8, F7DGY8_MONDO

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