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M. domestica Gene: SMYD1 - ENSMODG00000009578 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000009578
NameSMYD1
DescriptionSET and MYND domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20986]
OrganismMonodelphis domestica (opossum)
Synonym(s)bop, kmt3d, zmynd22

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
687
  • 687
  • 872
  • 914
96.83
  • 96.83
  • 95.98
  • 95.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.19e3
  • 1.19e3
94.51
  • 94.51
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
4.20e3
  • 4.20e3
  • 8.69e3
  • 1.11e4
80.62
  • 80.62
  • 59.89
  • 48.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
5.25e3
  • 5.25e3
  • 5.55e3
75.77
  • 75.77
  • 74.36
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
8.45e3
  • 8.45e3
  • 8.84e3
61.00
  • 61.00
  • 59.17
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
8.48e3
  • 8.48e3
  • 1.81e4
  • 1.95e4
60.87
  • 60.87
  • 16.24
  • 9.79
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
9.77e3
  • 9.77e3
  • 1.34e4
  • 1.57e4
54.92
  • 54.92
  • 38.20
  • 27.56
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
1.02e4
  • 1.02e4
53.07
  • 53.07
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.25e4
  • 1.25e4
42.46
  • 42.46
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.28e4
  • 1.28e4
41.08
  • 41.08
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.33e4
  • 1.33e4
38.68
  • 38.68
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.37e4
  • 1.37e4
36.81
  • 36.81
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
34.65
  • 34.65
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.48e4
  • 1.48e4
31.79
  • 31.79
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.61e4
  • 1.61e4
  • 1.65e4
  • 1.66e4
25.48
  • 25.48
  • 23.62
  • 23.57
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.63e4
  • 1.63e4
24.88
  • 24.88
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.80e4
  • 1.80e4
16.87
  • 16.87
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSMODG00000009578 (SMYD1)
HGNCHGNC:20986 (SMYD1)
Uniprot/SPTREMBLF7AX16, F7AX16_MONDO

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