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M. domestica Gene: HOXD4 - ENSMODG00000009598 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000009598
NameHOXD4
Descriptionhomeobox D4 [Source:HGNC Symbol;Acc:HGNC:5138]
OrganismMonodelphis domestica (opossum)
Synonym(s)hox4, hox4b
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.79e3
  • 3.79e3
  • 4.42e3
82.49
  • 82.49
  • 79.60
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
6.36e3
  • 6.36e3
  • 9.11e3
70.64
  • 70.64
  • 57.93
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
6.93e3
  • 6.93e3
68.00
  • 68.00
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
7.00e3
  • 7.00e3
  • 7.54e3
  • 8.49e3
67.69
  • 67.69
  • 65.18
  • 60.79
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
7.88e3
  • 7.88e3
  • 1.55e4
63.62
  • 63.62
  • 28.63
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
9.55e3
  • 9.55e3
55.91
  • 55.91
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
9.69e3
  • 9.69e3
  • 1.19e4
55.26
  • 55.26
  • 44.85
AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.05e4
  • 1.05e4
51.48
  • 51.48
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.23e4
  • 1.23e4
43.42
  • 43.42
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.31e4
  • 1.31e4
  • 1.32e4
  • 1.39e4
39.64
  • 39.64
  • 39.17
  • 35.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.36e4
  • 1.36e4
37.15
  • 37.15
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.41e4
  • 1.41e4
34.77
  • 34.77
AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
34.38
  • 34.38
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.44e4
  • 1.44e4
  • 1.59e4
33.48
  • 33.48
  • 26.73
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.44e4
  • 1.44e4
  • 1.52e4
  • 1.72e4
33.44
  • 33.44
  • 29.67
  • 20.44
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.52e4
  • 1.52e4
29.82
  • 29.82
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.52e4
  • 1.52e4
  • 2.08e4
29.68
  • 29.68
  • 4.20
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria10 species10 genesCompare expression
Mammalia11 species11 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression

Orthology information comes from OMA : ENSMODG00000009598.

Cross-references

EnsemblENSMODG00000009598 (HOXD4)
HGNCHGNC:5138 (HOXD4)
Uniprot/SPTREMBLF7A8R4, F7A8R4_MONDO

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