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M. domestica Gene: PDS5B - ENSMODG00000009630 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000009630
NamePDS5B
DescriptionPDS5 cohesin associated factor B [Source:HGNC Symbol;Acc:HGNC:20418]
OrganismMonodelphis domestica (opossum)
Synonym(s)aprin, as3, cg008, flj23236, kiaa0979
Orthologs(s)24 orthologs
Paralog(s)280 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
2.44e3
  • 2.44e3
  • 5.71e3
88.75
  • 88.75
  • 73.63
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
3.95e3
  • 3.95e3
  • 4.83e3
  • 4.84e3
81.76
  • 81.76
  • 77.70
  • 77.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
4.46e3
  • 4.46e3
79.40
  • 79.40
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
4.60e3
  • 4.60e3
78.77
  • 78.77
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
5.86e3
  • 5.86e3
72.94
  • 72.94
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
6.70e3
  • 6.70e3
69.06
  • 69.06
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
6.91e3
  • 6.91e3
68.12
  • 68.12
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
7.17e3
  • 7.17e3
  • 8.02e3
  • 8.13e3
66.88
  • 66.88
  • 62.99
  • 62.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
7.32e3
  • 7.32e3
66.22
  • 66.22
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
7.54e3
  • 7.54e3
  • 8.08e3
65.21
  • 65.21
  • 62.69
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
7.55e3
  • 7.55e3
65.15
  • 65.15
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
7.84e3
  • 7.84e3
  • 8.64e3
  • 1.06e4
63.80
  • 63.80
  • 60.13
  • 51.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
8.04e3
  • 8.04e3
  • 8.91e3
  • 9.16e3
62.87
  • 62.87
  • 58.85
  • 57.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
8.19e3
  • 8.19e3
62.18
  • 62.18
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
8.26e3
  • 8.26e3
  • 8.82e3
  • 9.77e3
61.87
  • 61.87
  • 59.27
  • 54.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
8.71e3
  • 8.71e3
59.81
  • 59.81
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
8.92e3
  • 8.92e3
58.80
  • 58.80
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
9.15e3
  • 9.15e3
  • 9.60e3
57.76
  • 57.76
  • 55.69
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
9.26e3
  • 9.26e3
57.25
  • 57.25
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.02e4
  • 1.02e4
53.07
  • 53.07
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.06e4
  • 1.06e4
  • 1.08e4
51.17
  • 51.17
  • 50.01
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSMODG00000009630.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota280 genesCompare expression

Paralogy information comes from OMA : ENSMODG00000009630.

Cross-references

EnsemblENSMODG00000009630 (PDS5B)
HGNCHGNC:20418 (PDS5B)
Uniprot/SPTREMBLF6RDQ6, F6RDQ6_MONDO

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