M. domestica Gene: CASQ1 - ENSMODG00000009644 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000009644
NameCASQ1
Descriptioncalsequestrin 1 [Source:HGNC Symbol;Acc:HGNC:1512]
OrganismMonodelphis domestica (opossum)
Synonym(s)casq, pdib1
Orthologs(s)16 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
150
  • 150
99.31
  • 99.31
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
728
  • 728
  • 1.11e3
  • 1.27e3
96.64
  • 96.64
  • 94.90
  • 94.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
8.03e3
  • 8.03e3
62.95
  • 62.95
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.08e4
  • 1.08e4
50.24
  • 50.24
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.10e4
  • 1.10e4
  • 1.17e4
49.32
  • 49.32
  • 45.89
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.14e4
  • 1.14e4
  • 1.23e4
  • 1.45e4
47.57
  • 47.57
  • 43.26
  • 33.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
1.14e4
  • 1.14e4
47.56
  • 47.56
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.20e4
  • 1.20e4
44.74
  • 44.74
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
  • 1.27e4
  • 1.31e4
44.20
  • 44.20
  • 41.59
  • 39.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
42.51
  • 42.51
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.30e4
  • 1.30e4
39.97
  • 39.97
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
1.31e4
  • 1.31e4
39.68
  • 39.68
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.37e4
  • 1.37e4
36.57
  • 36.57
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.39e4
  • 1.39e4
  • 1.46e4
35.84
  • 35.84
  • 32.80
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.41e4
  • 1.41e4
  • 1.79e4
34.70
  • 34.70
  • 17.29
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
  • 1.44e4
  • 1.44e4
34.65
  • 34.65
  • 33.70
  • 33.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
1.42e4
  • 1.42e4
  • 1.69e4
34.59
  • 34.59
  • 22.11
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.43e4
  • 1.43e4
  • 1.46e4
  • 1.60e4
34.08
  • 34.08
  • 32.80
  • 26.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.45e4
  • 1.45e4
33.01
  • 33.01
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.67e4
  • 1.67e4
23.06
  • 23.06
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Bilateria16 species16 genesCompare expression

Orthology information comes from OMA : ENSMODG00000009644.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression

Paralogy information comes from OMA : ENSMODG00000009644.

Cross-references

EnsemblENSMODG00000009644 (CASQ1)
HGNCHGNC:1512 (CASQ1)
Uniprot/SPTREMBLF6QTC3, F6QTC3_MONDO

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