M. domestica Gene: SSSCA1 - ENSMODG00000009665 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000009665
NameSSSCA1
DescriptionSjogren syndrome/scleroderma autoantigen 1 [Source:HGNC Symbol;Acc:HGNC:11328]
OrganismMonodelphis domestica (opossum)
Synonym(s)p27
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
433
  • 433
  • 701
  • 763
98.01
  • 98.01
  • 96.77
  • 96.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
667
  • 667
  • 1.18e3
  • 2.93e3
96.92
  • 96.92
  • 94.57
  • 86.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
787
  • 787
96.37
  • 96.37
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
802
  • 802
96.30
  • 96.30
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
869
  • 869
95.99
  • 95.99
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
911
  • 911
95.80
  • 95.80
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
961
  • 961
95.57
  • 95.57
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
1.00e3
  • 1.00e3
  • 1.40e3
95.37
  • 95.37
  • 93.54
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
1.09e3
  • 1.09e3
  • 2.43e3
94.99
  • 94.99
  • 88.77
AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.11e3
  • 1.11e3
94.89
  • 94.89
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.12e3
  • 1.12e3
94.82
  • 94.82
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.24e3
  • 1.24e3
  • 1.43e3
  • 1.92e3
94.29
  • 94.29
  • 93.42
  • 91.14
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.30e3
  • 1.30e3
94.00
  • 94.00
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.47e3
  • 1.47e3
93.22
  • 93.22
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.48e3
  • 1.48e3
  • 1.66e3
  • 1.74e3
93.16
  • 93.16
  • 92.35
  • 91.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.58e3
  • 1.58e3
92.71
  • 92.71
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.59e3
  • 1.59e3
92.68
  • 92.68
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.62e3
  • 1.62e3
  • 1.81e3
92.53
  • 92.53
  • 91.66
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.85e3
  • 1.85e3
91.45
  • 91.45
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.25e3
  • 2.25e3
  • 2.44e3
  • 2.75e3
89.60
  • 89.60
  • 88.75
  • 87.30
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.02e3
  • 3.02e3
  • 3.27e3
86.07
  • 86.07
  • 84.93
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression
Bilateria16 species16 genesCompare expression

Orthology information comes from OMA : ENSMODG00000009665.

Cross-references

EnsemblENSMODG00000009665 (SSSCA1)
HGNCHGNC:11328 (SSSCA1)
Uniprot/SPTREMBLF6SHT3, F6SHT3_MONDO

Do not show this banner again