M. domestica Gene: PRPF4B - ENSMODG00000009756 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000009756
NamePRPF4B
Descriptionpre-mRNA processing factor 4B [Source:HGNC Symbol;Acc:HGNC:17346]
OrganismMonodelphis domestica (opossum)
Synonym(s)kiaa0536, pr4h, prp4
Orthologs(s)25 orthologs
Paralog(s)280 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.11e3
  • 1.11e3
  • 2.37e3
  • 3.22e3
94.88
  • 94.88
  • 89.06
  • 85.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.47e3
  • 1.47e3
  • 2.47e3
93.23
  • 93.23
  • 88.61
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
2.21e3
  • 2.21e3
89.82
  • 89.82
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
2.26e3
  • 2.26e3
89.55
  • 89.55
AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
2.34e3
  • 2.34e3
89.22
  • 89.22
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
2.41e3
  • 2.41e3
88.87
  • 88.87
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
2.86e3
  • 2.86e3
  • 3.55e3
  • 4.47e3
86.81
  • 86.81
  • 83.61
  • 79.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
3.28e3
  • 3.28e3
  • 6.63e3
  • 7.09e3
84.88
  • 84.88
  • 69.38
  • 67.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
3.75e3
  • 3.75e3
82.69
  • 82.69
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.77e3
  • 3.77e3
  • 4.89e3
  • 5.04e3
82.59
  • 82.59
  • 77.42
  • 76.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
3.81e3
  • 3.81e3
  • 4.32e3
82.43
  • 82.43
  • 80.08
AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
3.92e3
  • 3.92e3
81.88
  • 81.88
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
4.32e3
  • 4.32e3
80.08
  • 80.08
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
4.34e3
  • 4.34e3
79.96
  • 79.96
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
4.58e3
  • 4.58e3
78.87
  • 78.87
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
4.71e3
  • 4.71e3
  • 7.33e3
78.25
  • 78.25
  • 66.16
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
4.95e3
  • 4.95e3
  • 5.52e3
  • 6.84e3
77.14
  • 77.14
  • 74.53
  • 68.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
5.44e3
  • 5.44e3
  • 5.95e3
74.88
  • 74.88
  • 72.52
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
6.01e3
  • 6.01e3
72.25
  • 72.25
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
6.42e3
  • 6.42e3
70.35
  • 70.35
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
6.79e3
  • 6.79e3
68.66
  • 68.66
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
7.40e3
  • 7.40e3
65.85
  • 65.85
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSMODG00000009756.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota280 genesCompare expression

Paralogy information comes from OMA : ENSMODG00000009756.

Cross-references

EnsemblENSMODG00000009756 (PRPF4B)
HGNCHGNC:17346 (PRPF4B)
Uniprot/SPTREMBLF6TFJ3, F6TFJ3_MONDO

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