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M. domestica Gene: SLC6A4 - ENSMODG00000009884 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000009884
NameSLC6A4
Descriptionsolute carrier family 6 (neurotransmitter transporter), member 4 [Source:HGNC Symbol;Acc:HGNC:11050]
OrganismMonodelphis domestica (opossum)
Synonym(s)5-htt, htt, ocd1, sert1
Orthologs(s)25 orthologs
Paralog(s)14 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0000104life cycle
2.46e3
  • 2.46e3
88.63
  • 88.63
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
6.64e3
  • 6.64e3
  • 1.02e4
69.33
  • 69.33
  • 52.92
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
8.91e3
  • 8.91e3
  • 1.20e4
  • 1.22e4
58.88
  • 58.88
  • 44.49
  • 43.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
8.96e3
  • 8.96e3
  • 1.01e4
58.63
  • 58.63
  • 53.54
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
9.52e3
  • 9.52e3
  • 1.05e4
  • 1.12e4
56.07
  • 56.07
  • 51.63
  • 48.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.06e4
  • 1.06e4
  • 1.14e4
  • 1.18e4
51.00
  • 51.00
  • 47.39
  • 45.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.25e4
  • 1.25e4
42.12
  • 42.12
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
1.26e4
  • 1.26e4
  • 1.36e4
41.71
  • 41.71
  • 37.02
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.30e4
  • 1.30e4
  • 1.37e4
  • 1.45e4
39.84
  • 39.84
  • 36.70
  • 33.11
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.37e4
  • 1.37e4
36.98
  • 36.98
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.41e4
  • 1.41e4
34.81
  • 34.81
AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
34.06
  • 34.06
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
  • 1.56e4
30.19
  • 30.19
  • 28.10
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.57e4
  • 1.57e4
27.31
  • 27.31
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.59e4
  • 1.59e4
26.43
  • 26.43
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSMODG00000009884.

Paralogs (same species)

Cross-references

EnsemblENSMODG00000009884 (SLC6A4)
HGNCHGNC:11050 (SLC6A4)
Uniprot/SPTREMBLF6VD16, F6VD16_MONDO

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