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M. domestica Gene: SPG20 - ENSMODG00000009980 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000009980
NameSPG20
Descriptionspastic paraplegia 20 (Troyer syndrome) [Source:HGNC Symbol;Acc:HGNC:18514]
OrganismMonodelphis domestica (opossum)
Synonym(s)kiaa0610, tahccp1
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
5.43e3
  • 5.43e3
  • 9.20e3
74.93
  • 74.93
  • 57.54
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
5.73e3
  • 5.73e3
73.55
  • 73.55
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
6.18e3
  • 6.18e3
71.49
  • 71.49
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
6.39e3
  • 6.39e3
  • 7.66e3
  • 7.86e3
70.51
  • 70.51
  • 64.64
  • 63.70
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
6.54e3
  • 6.54e3
69.80
  • 69.80
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
7.57e3
  • 7.57e3
65.07
  • 65.07
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
7.61e3
  • 7.61e3
  • 1.08e4
64.85
  • 64.85
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
7.68e3
  • 7.68e3
64.56
  • 64.56
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
7.70e3
  • 7.70e3
64.44
  • 64.44
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
7.78e3
  • 7.78e3
64.08
  • 64.08
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
7.81e3
  • 7.81e3
  • 9.59e3
  • 1.03e4
63.93
  • 63.93
  • 55.72
  • 52.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
8.05e3
  • 8.05e3
  • 1.03e4
  • 1.12e4
62.85
  • 62.85
  • 52.57
  • 48.11
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
8.69e3
  • 8.69e3
  • 9.79e3
  • 9.82e3
59.90
  • 59.90
  • 54.79
  • 54.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
8.72e3
  • 8.72e3
59.74
  • 59.74
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
8.93e3
  • 8.93e3
58.75
  • 58.75
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
9.00e3
  • 9.00e3
58.45
  • 58.45
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
9.17e3
  • 9.17e3
57.68
  • 57.68
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
9.63e3
  • 9.63e3
  • 1.02e4
55.53
  • 55.53
  • 52.77
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
9.94e3
  • 9.94e3
  • 9.97e3
54.10
  • 54.10
  • 53.99
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.07e4
  • 1.07e4
  • 1.09e4
  • 1.22e4
50.41
  • 50.41
  • 49.74
  • 43.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.20e4
  • 1.20e4
44.75
  • 44.75
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.27e4
  • 1.27e4
41.39
  • 41.39
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSMODG00000009980.

Cross-references

EnsemblENSMODG00000009980 (SPG20)
HGNCHGNC:18514 (SPG20)
Uniprot/SPTREMBLF6Y7B7, F6Y7B7_MONDO

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