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M. domestica Gene: PAFAH1B1 - ENSMODG00000010776 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000010776
NamePAFAH1B1
Descriptionplatelet activating factor acetylhydrolase 1b regulatory subunit 1 [Source:HGNC Symbol;Acc:HGNC:8574]
OrganismMonodelphis domestica (opossum)
Synonym(s)lis1, mdcr, mds, pafah
Orthologs(s)27 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
355
  • 355
  • 602
98.37
  • 98.37
  • 97.23
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
532
  • 532
  • 760
  • 1.32e3
97.55
  • 97.55
  • 96.50
  • 93.90
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
776
  • 776
96.42
  • 96.42
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
882
  • 882
  • 1.12e3
  • 1.19e3
95.93
  • 95.93
  • 94.83
  • 94.52
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
912
  • 912
95.80
  • 95.80
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.02e3
  • 1.02e3
95.30
  • 95.30
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.07e3
  • 1.07e3
  • 1.18e3
95.07
  • 95.07
  • 94.58
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.19e3
  • 1.19e3
  • 1.35e3
  • 1.88e3
94.49
  • 94.49
  • 93.78
  • 91.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
1.28e3
  • 1.28e3
  • 1.47e3
94.11
  • 94.11
  • 93.22
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.28e3
  • 1.28e3
  • 1.50e3
  • 1.79e3
94.09
  • 94.09
  • 93.09
  • 91.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.32e3
  • 1.32e3
93.91
  • 93.91
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.36e3
  • 1.36e3
93.75
  • 93.75
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.41e3
  • 1.41e3
93.49
  • 93.49
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.49e3
  • 1.49e3
93.12
  • 93.12
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.70e3
  • 1.70e3
92.16
  • 92.16
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.89e3
  • 1.89e3
91.26
  • 91.26
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.92e3
  • 1.92e3
91.16
  • 91.16
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
2.07e3
  • 2.07e3
  • 2.41e3
90.45
  • 90.45
  • 88.88
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
2.10e3
  • 2.10e3
90.33
  • 90.33
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
2.50e3
  • 2.50e3
  • 2.66e3
  • 2.67e3
88.46
  • 88.46
  • 87.72
  • 87.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
2.52e3
  • 2.52e3
88.38
  • 88.38
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species20 genesCompare expression
Bilateria26 species27 genesCompare expression

Orthology information comes from OMA : ENSMODG00000010776.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta3 genesCompare expression

Paralogy information comes from OMA : ENSMODG00000010776.

Cross-references

EnsemblENSMODG00000010776 (PAFAH1B1)
HGNCHGNC:8574 (PAFAH1B1)
Uniprot/SPTREMBLF7FZQ6, F7FZQ6_MONDO

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