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M. domestica Gene: ATXN1 - ENSMODG00000010827 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000010827
NameATXN1
Descriptionataxin 1 [Source:HGNC Symbol;Acc:HGNC:10548]
OrganismMonodelphis domestica (opossum)
Synonym(s)atx1, d6s504e, sca1
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
4.07e3
  • 4.07e3
  • 5.59e3
  • 9.51e3
81.24
  • 81.24
  • 74.21
  • 56.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
4.28e3
  • 4.28e3
80.24
  • 80.24
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
4.95e3
  • 4.95e3
  • 1.16e4
  • 1.23e4
77.16
  • 77.16
  • 46.43
  • 43.01
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
5.91e3
  • 5.91e3
  • 9.19e3
72.72
  • 72.72
  • 57.59
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
6.11e3
  • 6.11e3
71.80
  • 71.80
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.92e3
  • 6.92e3
  • 8.14e3
  • 8.28e3
68.06
  • 68.06
  • 62.41
  • 61.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
7.69e3
  • 7.69e3
  • 9.51e3
  • 1.12e4
64.51
  • 64.51
  • 56.11
  • 48.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
9.20e3
  • 9.20e3
  • 9.42e3
57.53
  • 57.53
  • 56.51
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
9.49e3
  • 9.49e3
  • 1.07e4
56.20
  • 56.20
  • 50.77
AEIR
  • AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
9.64e3
  • 9.64e3
55.50
  • 55.50
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
9.64e3
  • 9.64e3
55.49
  • 55.49
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.00e4
  • 1.00e4
53.61
  • 53.61
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.10e4
  • 1.10e4
  • 1.21e4
  • 1.49e4
49.19
  • 49.19
  • 44.05
  • 31.26
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
1.14e4
  • 1.14e4
  • 1.16e4
47.23
  • 47.23
  • 46.26
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.23e4
  • 1.23e4
43.24
  • 43.24
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.23e4
  • 1.23e4
43.01
  • 43.01
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.24e4
  • 1.24e4
42.97
  • 42.97
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
42.19
  • 42.19
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.29e4
  • 1.29e4
40.60
  • 40.60
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
34.17
  • 34.17
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSMODG00000010827.

Cross-references

EnsemblENSMODG00000010827 (ATXN1)
HGNCHGNC:10548 (ATXN1)
Uniprot/SPTREMBLF7BE53, F7BE53_MONDO

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