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M. domestica Gene: SHROOM4 - ENSMODG00000011116 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000011116
NameSHROOM4
Descriptionshroom family member 4 [Source:HGNC Symbol;Acc:HGNC:29215]
OrganismMonodelphis domestica (opossum)
Synonym(s)kiaa1202
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0000104life cycle
2.01e3
  • 2.01e3
90.71
  • 90.71
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
2.59e3
  • 2.59e3
  • 3.11e3
  • 5.33e3
88.06
  • 88.06
  • 85.65
  • 75.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
3.14e3
  • 3.14e3
  • 3.38e3
85.51
  • 85.51
  • 84.42
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
6.17e3
  • 6.17e3
  • 8.74e3
  • 8.88e3
71.51
  • 71.51
  • 59.66
  • 59.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
6.26e3
  • 6.26e3
71.10
  • 71.10
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
6.67e3
  • 6.67e3
69.23
  • 69.23
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
7.43e3
  • 7.43e3
65.70
  • 65.70
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
7.61e3
  • 7.61e3
  • 1.07e4
  • 1.18e4
64.86
  • 64.86
  • 50.51
  • 45.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
7.89e3
  • 7.89e3
  • 1.02e4
63.59
  • 63.59
  • 53.03
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
8.57e3
  • 8.57e3
  • 9.80e3
  • 1.10e4
60.42
  • 60.42
  • 54.77
  • 49.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
8.69e3
  • 8.69e3
  • 9.13e3
59.87
  • 59.87
  • 57.85
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
8.84e3
  • 8.84e3
59.21
  • 59.21
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
9.30e3
  • 9.30e3
57.06
  • 57.06
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
9.42e3
  • 9.42e3
56.50
  • 56.50
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
9.56e3
  • 9.56e3
55.85
  • 55.85
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
9.57e3
  • 9.57e3
  • 1.05e4
  • 1.18e4
55.83
  • 55.83
  • 51.72
  • 45.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
9.76e3
  • 9.76e3
  • 1.02e4
54.94
  • 54.94
  • 52.82
AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.00e4
  • 1.00e4
53.77
  • 53.77
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
48.88
  • 48.88
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.27e4
  • 1.27e4
41.22
  • 41.22
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSMODG00000011116.

Cross-references

EnsemblENSMODG00000011116 (SHROOM4)
HGNCHGNC:29215 (SHROOM4)
Uniprot/SPTREMBLF7BBG6, F7BBG6_MONDO

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