We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

M. domestica Gene: COL5A2 - ENSMODG00000011359 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000011359
NameCOL5A2
Descriptioncollagen, type V, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2210]
OrganismMonodelphis domestica (opossum)
Orthologs(s)18 orthologs
Paralog(s)280 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
302
  • 302
98.61
  • 98.61
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
804
  • 804
96.29
  • 96.29
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.98e3
  • 1.98e3
  • 1.19e4
  • 1.35e4
90.85
  • 90.85
  • 44.99
  • 37.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
2.56e3
  • 2.56e3
  • 4.06e3
88.19
  • 88.19
  • 81.24
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
3.14e3
  • 3.14e3
  • 3.88e3
  • 4.00e3
85.53
  • 85.53
  • 82.10
  • 81.54
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
3.42e3
  • 3.42e3
  • 7.38e3
84.24
  • 84.24
  • 65.93
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
4.49e3
  • 4.49e3
79.27
  • 79.27
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
4.57e3
  • 4.57e3
78.89
  • 78.89
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
4.62e3
  • 4.62e3
78.65
  • 78.65
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
4.97e3
  • 4.97e3
77.06
  • 77.06
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
5.08e3
  • 5.08e3
  • 7.28e3
76.55
  • 76.55
  • 66.40
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
5.55e3
  • 5.55e3
74.37
  • 74.37
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
5.63e3
  • 5.63e3
  • 6.06e3
  • 7.74e3
74.02
  • 74.02
  • 72.03
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
8.32e3
  • 8.32e3
61.59
  • 61.59
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
9.00e3
  • 9.00e3
  • 1.17e4
58.47
  • 58.47
  • 46.16
AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
9.16e3
  • 9.16e3
57.71
  • 57.71
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.02e4
  • 1.02e4
53.11
  • 53.11
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.11e4
  • 1.11e4
  • 1.12e4
  • 1.12e4
48.86
  • 48.86
  • 48.48
  • 48.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.15e4
  • 1.15e4
  • 1.23e4
  • 1.24e4
46.77
  • 46.77
  • 43.42
  • 42.88
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
45.05
  • 45.05
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.37e4
  • 1.37e4
36.57
  • 36.57
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSMODG00000011359.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria4 genesCompare expression
Eukaryota280 genesCompare expression

Paralogy information comes from OMA : ENSMODG00000011359.

Cross-references

EnsemblENSMODG00000011359 (COL5A2)
HGNCHGNC:2210 (COL5A2)
Uniprot/SPTREMBLF6SPW3, F6SPW3_MONDO

Do not show this banner again