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M. domestica Gene: CACNA1A - ENSMODG00000011749 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000011749
NameCACNA1A
Descriptioncalcium channel, voltage-dependent, P/Q type, alpha 1A subunit [Source:HGNC Symbol;Acc:HGNC:1388]
OrganismMonodelphis domestica (opossum)
Synonym(s)apca, cacnl1a4, cav2.1, ea2, fhm, hpca, mhp, mhp1, sca6
Orthologs(s)20 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.09e3
  • 1.09e3
94.99
  • 94.99
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
3.43e3
  • 3.43e3
  • 4.29e3
  • 1.49e4
84.15
  • 84.15
  • 80.20
  • 31.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
6.51e3
  • 6.51e3
  • 1.15e4
69.94
  • 69.94
  • 47.14
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
7.59e3
  • 7.59e3
  • 9.16e3
  • 1.14e4
64.96
  • 64.96
  • 57.72
  • 47.29
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.18e4
  • 1.18e4
  • 1.25e4
45.41
  • 45.41
  • 42.29
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.23e4
  • 1.23e4
43.03
  • 43.03
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.27e4
  • 1.27e4
  • 1.31e4
  • 1.50e4
41.43
  • 41.43
  • 39.74
  • 30.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.41e4
  • 1.41e4
  • 1.45e4
34.93
  • 34.93
  • 33.27
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.43e4
  • 1.43e4
  • 1.47e4
  • 1.69e4
33.80
  • 33.80
  • 31.98
  • 22.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.45e4
  • 1.45e4
  • 1.52e4
  • 1.59e4
33.12
  • 33.12
  • 29.61
  • 26.37
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
30.41
  • 30.41
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.51e4
  • 1.51e4
30.25
  • 30.25
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.52e4
  • 1.52e4
29.88
  • 29.88
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.52e4
  • 1.52e4
29.73
  • 29.73
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.55e4
  • 1.55e4
28.32
  • 28.32
AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
1.61e4
  • 1.61e4
25.70
  • 25.70
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
1.64e4
  • 1.64e4
  • 1.68e4
24.36
  • 24.36
  • 22.44
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Bilateria20 species20 genesCompare expression

Orthology information comes from OMA : ENSMODG00000011749.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression
Metazoa5 genesCompare expression

Paralogy information comes from OMA : ENSMODG00000011749.

Cross-references

EnsemblENSMODG00000011749 (CACNA1A)
HGNCHGNC:1388 (CACNA1A)
Uniprot/SPTREMBLF6ZG07, F6ZG07_MONDO

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