M. domestica Gene: COL1A1 - ENSMODG00000011945 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000011945
NameCOL1A1
Descriptioncollagen, type I, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2197]
OrganismMonodelphis domestica (opossum)
Synonym(s)oi4
Orthologs(s)17 orthologs
Paralog(s)280 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
19.5
  • 19.5
99.91
  • 99.91
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
207
  • 207
  • 338
  • 487
99.05
  • 99.05
  • 98.44
  • 97.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
816
  • 816
96.24
  • 96.24
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.04e3
  • 1.04e3
95.19
  • 95.19
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.12e3
  • 1.12e3
  • 1.50e3
94.86
  • 94.86
  • 93.07
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.15e3
  • 1.15e3
94.68
  • 94.68
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
1.27e3
  • 1.27e3
94.14
  • 94.14
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.31e3
  • 1.31e3
  • 1.71e3
  • 3.38e3
93.97
  • 93.97
  • 92.11
  • 84.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
1.35e3
  • 1.35e3
  • 1.89e3
93.78
  • 93.78
  • 91.28
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.49e3
  • 1.49e3
  • 3.28e3
93.14
  • 93.14
  • 84.87
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.87e3
  • 1.87e3
91.38
  • 91.38
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.29e3
  • 2.29e3
  • 7.91e3
  • 1.07e4
89.45
  • 89.45
  • 63.47
  • 50.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
4.56e3
  • 4.56e3
  • 4.86e3
  • 7.63e3
78.97
  • 78.97
  • 77.55
  • 64.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
4.89e3
  • 4.89e3
77.41
  • 77.41
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
5.91e3
  • 5.91e3
  • 1.04e4
72.71
  • 72.71
  • 52.15
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
7.08e3
  • 7.08e3
67.31
  • 67.31
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
7.66e3
  • 7.66e3
64.66
  • 64.66
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
8.72e3
  • 8.72e3
59.76
  • 59.76
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
8.91e3
  • 8.91e3
58.86
  • 58.86
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
9.76e3
  • 9.76e3
  • 1.07e4
  • 1.20e4
54.96
  • 54.96
  • 50.56
  • 44.56
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
44.25
  • 44.25
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSMODG00000011945.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression
Bilateria4 genesCompare expression
Eukaryota280 genesCompare expression

Paralogy information comes from OMA : ENSMODG00000011945.

Cross-references

EnsemblENSMODG00000011945 (COL1A1)
HGNCHGNC:2197 (COL1A1)
Uniprot/SPTREMBLF7CV32, F7CV32_MONDO

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