M. domestica Gene: COL13A1 - ENSMODG00000012220 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000012220
NameCOL13A1
Descriptioncollagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2190]
OrganismMonodelphis domestica (opossum)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0000104life cycle
5.77e3
  • 5.77e3
73.35
  • 73.35
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
5.82e3
  • 5.82e3
73.14
  • 73.14
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.63e3
  • 6.63e3
  • 8.28e3
  • 8.61e3
69.40
  • 69.40
  • 61.79
  • 60.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
7.13e3
  • 7.13e3
67.06
  • 67.06
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
8.10e3
  • 8.10e3
  • 9.70e3
  • 9.75e3
62.61
  • 62.61
  • 55.23
  • 55.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
8.22e3
  • 8.22e3
  • 1.06e4
  • 1.22e4
62.05
  • 62.05
  • 50.87
  • 43.71
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
9.84e3
  • 9.84e3
  • 1.03e4
54.59
  • 54.59
  • 52.60
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
9.98e3
  • 9.98e3
53.91
  • 53.91
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
1.00e4
  • 1.00e4
53.63
  • 53.63
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.05e4
  • 1.05e4
  • 1.10e4
51.38
  • 51.38
  • 49.03
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.07e4
  • 1.07e4
  • 1.08e4
50.53
  • 50.53
  • 50.15
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.11e4
  • 1.11e4
48.53
  • 48.53
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.13e4
  • 1.13e4
48.03
  • 48.03
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.15e4
  • 1.15e4
  • 1.37e4
47.12
  • 47.12
  • 36.95
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.19e4
  • 1.19e4
45.00
  • 45.00
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.31e4
  • 1.31e4
39.59
  • 39.59
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
33.76
  • 33.76
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.54e4
  • 1.54e4
28.82
  • 28.82
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.59e4
  • 1.59e4
  • 1.67e4
  • 1.81e4
26.56
  • 26.56
  • 22.97
  • 16.56
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSMODG00000012220 (COL13A1)
HGNCHGNC:2190 (COL13A1)
Uniprot/SPTREMBLF6Z729, F6Z729_MONDO

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