M. domestica Gene: CACNA1D - ENSMODG00000012546 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000012546
NameCACNA1D
Descriptioncalcium channel, voltage-dependent, L type, alpha 1D subunit [Source:HGNC Symbol;Acc:HGNC:1391]
OrganismMonodelphis domestica (opossum)
Synonym(s)cach3, cacn4, cacnl1a2, cav1.3, cchl1a2
Orthologs(s)17 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
7.35e3
  • 7.35e3
  • 1.18e4
  • 1.42e4
66.06
  • 66.06
  • 45.45
  • 34.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
8.88e3
  • 8.88e3
59.01
  • 59.01
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.03e4
  • 1.03e4
  • 1.23e4
  • 1.32e4
52.52
  • 52.52
  • 43.32
  • 39.28
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.07e4
  • 1.07e4
  • 1.16e4
50.44
  • 50.44
  • 46.55
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
1.17e4
  • 1.17e4
  • 1.35e4
46.19
  • 46.19
  • 37.64
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.28e4
  • 1.28e4
41.00
  • 41.00
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.28e4
  • 1.28e4
  • 1.35e4
  • 1.48e4
40.96
  • 40.96
  • 37.59
  • 31.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.29e4
  • 1.29e4
40.28
  • 40.28
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.30e4
  • 1.30e4
39.88
  • 39.88
AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
38.73
  • 38.73
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.33e4
  • 1.33e4
38.43
  • 38.43
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.34e4
  • 1.34e4
  • 1.35e4
38.03
  • 38.03
  • 37.46
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
  • 1.51e4
  • 1.58e4
36.47
  • 36.47
  • 30.46
  • 26.96
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
1.40e4
  • 1.40e4
  • 1.46e4
35.15
  • 35.15
  • 32.61
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
  • 1.72e4
34.60
  • 34.60
  • 20.79
AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.49e4
  • 1.49e4
31.22
  • 31.22
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
30.21
  • 30.21
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.52e4
  • 1.52e4
29.80
  • 29.80
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.52e4
  • 1.52e4
29.61
  • 29.61
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression
Bilateria17 species17 genesCompare expression

Orthology information comes from OMA : ENSMODG00000012546.

Paralogs (same species)

Cross-references

EnsemblENSMODG00000012546 (CACNA1D)
HGNCHGNC:1391 (CACNA1D)
Uniprot/SPTREMBLF6PM16, F6PM16_MONDO

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