M. domestica Gene: NR1D1 - ENSMODG00000013032 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000013032
NameNR1D1
Descriptionnuclear receptor subfamily 1 group D member 1 [Source:HGNC Symbol;Acc:HGNC:7962]
OrganismMonodelphis domestica (opossum)
Synonym(s)ear-1, hrev, rev-erbaalpha, thra1, thral
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • UBERON:0000104life cycle
1.41e3
  • 1.41e3
93.51
  • 93.51
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.41e3
  • 1.41e3
93.47
  • 93.47
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
1.96e3
  • 1.96e3
  • 3.22e3
  • 1.35e4
90.96
  • 90.96
  • 85.13
  • 37.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
2.21e3
  • 2.21e3
89.82
  • 89.82
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
2.85e3
  • 2.85e3
86.84
  • 86.84
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
2.87e3
  • 2.87e3
  • 3.58e3
  • 5.91e3
86.77
  • 86.77
  • 83.47
  • 72.71
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.99e3
  • 2.99e3
  • 4.41e3
  • 4.68e3
86.20
  • 86.20
  • 79.63
  • 78.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.04e3
  • 3.04e3
  • 5.88e3
85.99
  • 85.99
  • 72.87
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
4.67e3
  • 4.67e3
  • 7.83e3
78.44
  • 78.44
  • 63.87
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
4.86e3
  • 4.86e3
  • 6.83e3
  • 7.12e3
77.58
  • 77.58
  • 68.45
  • 67.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
5.73e3
  • 5.73e3
  • 8.18e3
73.56
  • 73.56
  • 62.22
AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
5.93e3
  • 5.93e3
72.64
  • 72.64
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.95e3
  • 5.95e3
  • 6.44e3
  • 7.95e3
72.54
  • 72.54
  • 70.29
  • 63.31
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
7.50e3
  • 7.50e3
65.40
  • 65.40
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
7.71e3
  • 7.71e3
64.41
  • 64.41
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
8.48e3
  • 8.48e3
  • 9.27e3
60.86
  • 60.86
  • 57.22
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
8.88e3
  • 8.88e3
59.02
  • 59.02
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
1.11e4
  • 1.11e4
48.63
  • 48.63
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.12e4
  • 1.12e4
48.22
  • 48.22
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.15e4
  • 1.15e4
46.79
  • 46.79
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.24e4
  • 1.24e4
42.96
  • 42.96
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
1.38e4
  • 1.38e4
36.25
  • 36.25
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSMODG00000013032.

Cross-references

EnsemblENSMODG00000013032 (NR1D1)
HGNCHGNC:7962 (NR1D1)
Uniprot/SPTREMBLF7BNH8, F7BNH8_MONDO

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