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M. domestica Gene: RARA - ENSMODG00000013112 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000013112
NameRARA
Descriptionretinoic acid receptor, alpha [Source:HGNC Symbol;Acc:HGNC:9864]
OrganismMonodelphis domestica (opossum)
Synonym(s)nr1b1, rar
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000178blood
  • UBERON:0000104life cycle
2.64e3
  • 2.64e3
87.80
  • 87.80
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
2.88e3
  • 2.88e3
  • 3.26e3
86.70
  • 86.70
  • 84.96
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
3.26e3
  • 3.26e3
  • 5.08e3
  • 5.60e3
84.98
  • 84.98
  • 76.54
  • 74.15
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
3.29e3
  • 3.29e3
84.80
  • 84.80
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
3.36e3
  • 3.36e3
84.51
  • 84.51
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
3.63e3
  • 3.63e3
83.24
  • 83.24
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
3.66e3
  • 3.66e3
  • 3.88e3
  • 4.37e3
83.13
  • 83.13
  • 82.09
  • 79.82
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
3.73e3
  • 3.73e3
82.80
  • 82.80
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
3.94e3
  • 3.94e3
81.83
  • 81.83
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
4.09e3
  • 4.09e3
  • 7.78e3
  • 8.18e3
81.10
  • 81.10
  • 64.07
  • 62.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
4.27e3
  • 4.27e3
80.29
  • 80.29
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
4.28e3
  • 4.28e3
80.26
  • 80.26
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
5.20e3
  • 5.20e3
  • 5.94e3
  • 6.56e3
76.00
  • 76.00
  • 72.56
  • 69.72
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
5.65e3
  • 5.65e3
73.90
  • 73.90
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
5.83e3
  • 5.83e3
  • 7.48e3
73.10
  • 73.10
  • 65.49
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
6.19e3
  • 6.19e3
  • 7.75e3
71.42
  • 71.42
  • 64.21
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
6.46e3
  • 6.46e3
  • 6.56e3
70.16
  • 70.16
  • 69.70
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.55e3
  • 6.55e3
  • 7.10e3
  • 8.01e3
69.75
  • 69.75
  • 67.24
  • 63.01
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
7.06e3
  • 7.06e3
67.40
  • 67.40
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
1.04e4
  • 1.04e4
52.20
  • 52.20
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species17 genesCompare expression

Orthology information comes from OMA : ENSMODG00000013112.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSMODG00000013112.

Cross-references

EnsemblENSMODG00000013112 (RARA)
HGNCHGNC:9864 (RARA)
Uniprot/SPTREMBLF7BMR6, F7BMR6_MONDO

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