M. domestica Gene: SSBP1 - ENSMODG00000013601 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000013601
NameSSBP1
Descriptionsingle-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:HGNC:11317]
OrganismMonodelphis domestica (opossum)
Synonym(s)mtssb, ssbp
Orthologs(s)27 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
2.51e3
  • 2.51e3
88.41
  • 88.41
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
2.51e3
  • 2.51e3
88.39
  • 88.39
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
2.76e3
  • 2.76e3
87.27
  • 87.27
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
3.00e3
  • 3.00e3
86.17
  • 86.17
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
3.24e3
  • 3.24e3
  • 4.31e3
85.06
  • 85.06
  • 80.12
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
3.49e3
  • 3.49e3
  • 7.82e3
  • 8.21e3
83.87
  • 83.87
  • 63.91
  • 62.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
3.87e3
  • 3.87e3
82.13
  • 82.13
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
3.89e3
  • 3.89e3
82.06
  • 82.06
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
4.67e3
  • 4.67e3
78.42
  • 78.42
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
4.72e3
  • 4.72e3
  • 5.27e3
  • 7.02e3
78.23
  • 78.23
  • 75.67
  • 67.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
4.99e3
  • 4.99e3
76.97
  • 76.97
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.09e3
  • 5.09e3
  • 5.90e3
  • 8.58e3
76.50
  • 76.50
  • 72.77
  • 60.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
5.98e3
  • 5.98e3
  • 6.28e3
  • 7.66e3
72.38
  • 72.38
  • 71.00
  • 64.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
6.08e3
  • 6.08e3
71.94
  • 71.94
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
6.43e3
  • 6.43e3
  • 8.76e3
70.33
  • 70.33
  • 59.56
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
6.49e3
  • 6.49e3
  • 6.84e3
70.02
  • 70.02
  • 68.41
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
6.62e3
  • 6.62e3
69.42
  • 69.42
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
7.05e3
  • 7.05e3
  • 7.61e3
67.45
  • 67.45
  • 64.85
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
9.23e3
  • 9.23e3
57.40
  • 57.40
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.17e4
  • 1.17e4
  • 1.24e4
  • 1.38e4
45.97
  • 45.97
  • 42.77
  • 36.31
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.17e4
  • 1.17e4
45.89
  • 45.89
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
42.52
  • 42.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species16 genesCompare expression
Mammalia15 species17 genesCompare expression
Amniota17 species19 genesCompare expression
Tetrapoda18 species20 genesCompare expression
Euteleostomi19 species21 genesCompare expression
Bilateria25 species27 genesCompare expression

Orthology information comes from OMA : ENSMODG00000013601.

Cross-references

EnsemblENSMODG00000013601 (SSBP1)
HGNCHGNC:11317 (SSBP1)
Uniprot/SPTREMBLF6VVL1, F6VVL1_MONDO

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