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M. domestica Gene: SSC4D - ENSMODG00000013654 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000013654
NameSSC4D
Descriptionscavenger receptor cysteine rich family, 4 domains [Source:HGNC Symbol;Acc:HGNC:14461]
OrganismMonodelphis domestica (opossum)
Synonym(s)s4d-srcrb, srcrb-s4d, srcrb4d
Orthologs(s)12 orthologs
Paralog(s)280 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.08e4
  • 1.08e4
  • 1.14e4
  • 1.66e4
50.00
  • 50.00
  • 47.23
  • 23.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
  • 1.12e4
48.77
  • 48.77
  • 48.34
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.28e4
  • 1.28e4
40.75
  • 40.75
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.29e4
  • 1.29e4
  • 1.37e4
  • 1.58e4
40.62
  • 40.62
  • 36.87
  • 27.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.29e4
  • 1.29e4
40.26
  • 40.26
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
  • 1.57e4
39.25
  • 39.25
  • 27.40
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
1.34e4
  • 1.34e4
  • 1.44e4
38.01
  • 38.01
  • 33.40
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
36.98
  • 36.98
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
  • 1.52e4
  • 1.59e4
35.18
  • 35.18
  • 29.66
  • 26.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.43e4
  • 1.43e4
  • 1.81e4
34.19
  • 34.19
  • 16.48
AEIR
  • AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
1.45e4
  • 1.45e4
33.23
  • 33.23
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.57e4
  • 1.57e4
27.66
  • 27.66
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.62e4
  • 1.62e4
25.25
  • 25.25
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria8 species8 genesCompare expression
Mammalia9 species9 genesCompare expression
Amniota11 species11 genesCompare expression
Tetrapoda12 species12 genesCompare expression

Orthology information comes from OMA : ENSMODG00000013654.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota280 genesCompare expression

Paralogy information comes from OMA : ENSMODG00000013654.

Cross-references

EnsemblENSMODG00000013654 (SSC4D)
HGNCHGNC:14461 (SSC4D)
Uniprot/SPTREMBLF6UD58, F6UD58_MONDO

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