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M. domestica Gene: SNRPC - ENSMODG00000013904 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000013904
NameSNRPC
Descriptionsmall nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:HGNC:11157]
OrganismMonodelphis domestica (opossum)
Synonym(s)u1-c, yhc1
Orthologs(s)30 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
3.45e3
  • 3.45e3
  • 3.67e3
84.06
  • 84.06
  • 83.07
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
4.28e3
  • 4.28e3
  • 4.30e3
  • 4.40e3
80.24
  • 80.24
  • 80.15
  • 79.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
5.44e3
  • 5.44e3
74.88
  • 74.88
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000068embryo stage
5.77e3
  • 5.77e3
  • 7.88e3
  • 8.32e3
73.37
  • 73.37
  • 63.64
  • 61.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
6.78e3
  • 6.78e3
  • 8.19e3
  • 1.04e4
68.68
  • 68.68
  • 62.18
  • 51.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
7.22e3
  • 7.22e3
66.66
  • 66.66
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
8.05e3
  • 8.05e3
62.84
  • 62.84
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
9.69e3
  • 9.69e3
55.27
  • 55.27
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
9.87e3
  • 9.87e3
54.44
  • 54.44
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.01e4
  • 1.01e4
53.34
  • 53.34
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.03e4
  • 1.03e4
  • 1.03e4
  • 1.31e4
52.24
  • 52.24
  • 52.24
  • 39.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.04e4
  • 1.04e4
  • 1.19e4
52.09
  • 52.09
  • 44.97
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.05e4
  • 1.05e4
51.66
  • 51.66
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.16e4
  • 1.16e4
  • 1.21e4
46.32
  • 46.32
  • 44.04
AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.17e4
  • 1.17e4
46.12
  • 46.12
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
1.17e4
  • 1.17e4
45.85
  • 45.85
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
44.41
  • 44.41
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
  • 1.27e4
42.31
  • 42.31
  • 41.25
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.28e4
  • 1.28e4
40.75
  • 40.75
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.32e4
  • 1.32e4
  • 1.34e4
  • 1.43e4
38.96
  • 38.96
  • 38.33
  • 34.01
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species18 genesCompare expression
Mammalia15 species19 genesCompare expression
Amniota17 species21 genesCompare expression
Tetrapoda18 species22 genesCompare expression
Euteleostomi19 species23 genesCompare expression
Bilateria26 species30 genesCompare expression

Orthology information comes from OMA : ENSMODG00000013904.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSMODG00000013904.

Cross-references

EnsemblENSMODG00000013904 (SNRPC)
HGNCHGNC:11157 (SNRPC)
Uniprot/SPTREMBLF6VBS4, F6VBS4_MONDO

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