We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

M. domestica Gene: HMGA1 - ENSMODG00000013940 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000013940
NameHMGA1
Descriptionhigh mobility group AT-hook 1 [Source:HGNC Symbol;Acc:HGNC:5010]
OrganismMonodelphis domestica (opossum)
Synonym(s)hmgiy
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
43.1
  • 43.1
99.81
  • 99.81
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
58.1
  • 58.1
99.74
  • 99.74
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
124
  • 124
99.43
  • 99.43
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
174
  • 174
  • 940
99.20
  • 99.20
  • 95.66
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
175
  • 175
  • 499
  • 1.20e3
99.20
  • 99.20
  • 97.70
  • 94.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
278
  • 278
  • 278
98.72
  • 98.72
  • 98.72
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
282
  • 282
  • 304
  • 339
98.70
  • 98.70
  • 98.60
  • 98.44
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
305
  • 305
98.60
  • 98.60
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
466
  • 466
97.85
  • 97.85
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
637
  • 637
97.06
  • 97.06
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
751
  • 751
  • 1.08e3
  • 2.08e3
96.54
  • 96.54
  • 95.00
  • 90.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
836
  • 836
  • 1.60e3
  • 3.51e3
96.15
  • 96.15
  • 92.62
  • 83.79
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
853
  • 853
  • 1.59e3
  • 2.32e3
96.06
  • 96.06
  • 92.65
  • 89.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
929
  • 929
  • 2.58e3
95.71
  • 95.71
  • 88.11
AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.01e3
  • 1.01e3
95.33
  • 95.33
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.04e3
  • 1.04e3
95.20
  • 95.20
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.39e3
  • 1.39e3
93.61
  • 93.61
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.42e3
  • 1.42e3
93.47
  • 93.47
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.48e3
  • 1.48e3
93.19
  • 93.19
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
2.22e3
  • 2.22e3
  • 2.24e3
89.77
  • 89.77
  • 89.69
AEIR
  • AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
2.79e3
  • 2.79e3
87.11
  • 87.11
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria10 species11 genesCompare expression
Amniota11 species12 genesCompare expression
Euteleostomi12 species14 genesCompare expression

Orthology information comes from OMA : ENSMODG00000013940.

Cross-references

EnsemblENSMODG00000013940 (HMGA1)
HGNCHGNC:5010 (HMGA1)
Uniprot/SPTREMBLF6SBW6, F6SBW6_MONDO

Do not show this banner again