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M. domestica Gene: FGD3 - ENSMODG00000014333 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000014333
NameFGD3
DescriptionFYVE, RhoGEF and PH domain containing 3 [Source:HGNC Symbol;Acc:HGNC:16027]
OrganismMonodelphis domestica (opossum)
Synonym(s)flj00004, zfyve5
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
2.48e3
  • 2.48e3
  • 3.85e3
88.57
  • 88.57
  • 82.22
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
3.82e3
  • 3.82e3
  • 9.41e3
  • 1.07e4
82.38
  • 82.38
  • 56.54
  • 50.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
4.25e3
  • 4.25e3
80.40
  • 80.40
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
4.62e3
  • 4.62e3
78.68
  • 78.68
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
4.90e3
  • 4.90e3
77.40
  • 77.40
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
4.92e3
  • 4.92e3
77.28
  • 77.28
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
5.98e3
  • 5.98e3
  • 6.57e3
72.40
  • 72.40
  • 69.69
AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
6.84e3
  • 6.84e3
68.43
  • 68.43
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
7.42e3
  • 7.42e3
65.76
  • 65.76
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
7.58e3
  • 7.58e3
  • 8.56e3
  • 9.24e3
65.01
  • 65.01
  • 60.47
  • 57.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
7.84e3
  • 7.84e3
  • 8.34e3
63.82
  • 63.82
  • 61.52
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
8.22e3
  • 8.22e3
  • 8.43e3
  • 8.70e3
62.06
  • 62.06
  • 61.10
  • 59.82
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
9.19e3
  • 9.19e3
57.59
  • 57.59
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
9.20e3
  • 9.20e3
  • 1.01e4
  • 1.12e4
57.55
  • 57.55
  • 53.15
  • 48.34
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
9.32e3
  • 9.32e3
56.97
  • 56.97
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.03e4
  • 1.03e4
  • 1.05e4
  • 1.11e4
52.32
  • 52.32
  • 51.47
  • 48.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.06e4
  • 1.06e4
51.24
  • 51.24
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.09e4
  • 1.09e4
  • 1.24e4
49.72
  • 49.72
  • 42.93
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.10e4
  • 1.10e4
49.42
  • 49.42
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.10e4
  • 1.10e4
49.14
  • 49.14
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression

Orthology information comes from OMA : ENSMODG00000014333.

Cross-references

EnsemblENSMODG00000014333 (FGD3)
HGNCHGNC:16027 (FGD3)
Uniprot/SPTREMBLF6UMD4, F6UMD4_MONDO

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