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M. domestica Gene: TREX1 - ENSMODG00000014359 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000014359
NameTREX1
Descriptionthree prime repair exonuclease 1 [Source:HGNC Symbol;Acc:HGNC:12269]
OrganismMonodelphis domestica (opossum)
Synonym(s)ags1, drn3
Orthologs(s)13 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
2.83e3
  • 2.83e3
  • 6.14e3
86.94
  • 86.94
  • 71.66
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
3.19e3
  • 3.19e3
  • 5.25e3
  • 5.75e3
85.30
  • 85.30
  • 75.76
  • 73.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
4.05e3
  • 4.05e3
81.32
  • 81.32
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
4.44e3
  • 4.44e3
79.51
  • 79.51
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
5.86e3
  • 5.86e3
72.96
  • 72.96
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
6.83e3
  • 6.83e3
68.48
  • 68.48
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
7.05e3
  • 7.05e3
67.46
  • 67.46
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
7.42e3
  • 7.42e3
  • 7.67e3
  • 8.17e3
65.76
  • 65.76
  • 64.57
  • 62.28
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
7.48e3
  • 7.48e3
65.49
  • 65.49
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
7.89e3
  • 7.89e3
  • 8.26e3
63.60
  • 63.60
  • 61.87
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
8.98e3
  • 8.98e3
  • 9.79e3
  • 1.11e4
58.54
  • 58.54
  • 54.81
  • 48.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
9.32e3
  • 9.32e3
56.97
  • 56.97
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
9.86e3
  • 9.86e3
  • 1.17e4
54.49
  • 54.49
  • 45.99
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
9.92e3
  • 9.92e3
54.20
  • 54.20
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
1.05e4
  • 1.05e4
  • 1.11e4
51.57
  • 51.57
  • 48.66
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
1.07e4
  • 1.07e4
  • 1.16e4
  • 1.25e4
50.65
  • 50.65
  • 46.33
  • 42.13
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.10e4
  • 1.10e4
49.39
  • 49.39
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.17e4
  • 1.17e4
45.97
  • 45.97
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.29e4
  • 1.29e4
40.67
  • 40.67
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.29e4
  • 1.29e4
  • 1.46e4
  • 1.59e4
40.51
  • 40.51
  • 32.53
  • 26.40
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
38.53
  • 38.53
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria11 species11 genesCompare expression
Mammalia12 species12 genesCompare expression
Amniota13 species13 genesCompare expression

Orthology information comes from OMA : ENSMODG00000014359.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata2 genesCompare expression

Paralogy information comes from OMA : ENSMODG00000014359.

Cross-references

EnsemblENSMODG00000014359 (TREX1)
HGNCHGNC:12269 (TREX1)
Uniprot/SPTREMBLF6U4Q1, F6U4Q1_MONDO

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