M. domestica Gene: SLC1A6 - ENSMODG00000014481 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000014481
NameSLC1A6
Descriptionsolute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:10944]
OrganismMonodelphis domestica (opossum)
Synonym(s)eaat4
Orthologs(s)13 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
628
  • 628
97.11
  • 97.11
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000068embryo stage
3.55e3
  • 3.55e3
  • 1.28e4
  • 1.50e4
83.60
  • 83.60
  • 40.80
  • 30.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
8.30e3
  • 8.30e3
  • 8.31e3
61.69
  • 61.69
  • 61.66
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
8.99e3
  • 8.99e3
  • 1.10e4
  • 1.14e4
58.49
  • 58.49
  • 49.16
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.09e4
  • 1.09e4
49.65
  • 49.65
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.16e4
  • 1.16e4
  • 1.40e4
  • 1.48e4
46.50
  • 46.50
  • 35.28
  • 31.76
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.17e4
  • 1.17e4
46.12
  • 46.12
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa2 genesCompare expression
Opisthokonta5 genesCompare expression

Paralogy information comes from OMA : ENSMODG00000014481.

Cross-references

EnsemblENSMODG00000014481 (SLC1A6)
HGNCHGNC:10944 (SLC1A6)
Uniprot/SPTREMBLF7FKW4, F7FKW4_MONDO

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