M. domestica Gene: OPN1SW - ENSMODG00000015071 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000015071
NameOPN1SW
Descriptionopsin 1 (cone pigments), short-wave-sensitive [Source:HGNC Symbol;Acc:HGNC:1012]
OrganismMonodelphis domestica (opossum)
Synonym(s)bcp, bop, cbt, sws1
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • UBERON:0000104life cycle
1.07e4
  • 1.07e4
50.61
  • 50.61
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.11e4
  • 1.11e4
  • 1.21e4
  • 1.22e4
48.71
  • 48.71
  • 43.97
  • 43.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
1.17e4
  • 1.17e4
46.12
  • 46.12
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
  • 1.20e4
  • 1.39e4
44.87
  • 44.87
  • 44.77
  • 35.79
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.22e4
  • 1.22e4
  • 1.34e4
  • 1.44e4
43.86
  • 43.86
  • 38.33
  • 33.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.22e4
  • 1.22e4
  • 1.42e4
43.66
  • 43.66
  • 34.24
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.25e4
  • 1.25e4
42.24
  • 42.24
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.26e4
  • 1.26e4
  • 1.30e4
42.00
  • 42.00
  • 39.96
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
41.91
  • 41.91
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.33e4
  • 1.33e4
  • 1.37e4
  • 1.41e4
38.46
  • 38.46
  • 36.73
  • 34.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
  • 1.72e4
35.37
  • 35.37
  • 20.39
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
1.43e4
  • 1.43e4
  • 1.94e4
34.05
  • 34.05
  • 10.23
AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.45e4
  • 1.45e4
33.12
  • 33.12
AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.46e4
  • 1.46e4
32.61
  • 32.61
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.49e4
  • 1.49e4
31.01
  • 31.01
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.53e4
  • 1.53e4
29.19
  • 29.19
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.55e4
  • 1.55e4
28.39
  • 28.39
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.60e4
  • 1.60e4
  • 1.63e4
  • 1.77e4
26.35
  • 26.35
  • 24.97
  • 18.14
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSMODG00000015071.

Cross-references

EnsemblENSMODG00000015071 (OPN1SW)
HGNCHGNC:1012 (OPN1SW)
Uniprot/SPTREMBLF7FH93, F7FH93_MONDO

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