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M. domestica Gene: SEC22A - ENSMODG00000018331 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000018331
NameSEC22A
DescriptionSEC22 homolog A, vesicle trafficking protein [Source:HGNC Symbol;Acc:HGNC:20260]
OrganismMonodelphis domestica (opossum)
Synonym(s)sec22l2
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.47e3
  • 1.47e3
93.20
  • 93.20
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
3.09e3
  • 3.09e3
85.75
  • 85.75
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
4.19e3
  • 4.19e3
  • 5.87e3
  • 6.01e3
80.67
  • 80.67
  • 72.89
  • 72.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
6.03e3
  • 6.03e3
  • 9.01e3
  • 1.22e4
72.19
  • 72.19
  • 58.42
  • 43.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
7.92e3
  • 7.92e3
63.44
  • 63.44
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
8.04e3
  • 8.04e3
  • 9.08e3
62.90
  • 62.90
  • 58.06
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
8.38e3
  • 8.38e3
  • 1.08e4
  • 1.19e4
61.30
  • 61.30
  • 50.23
  • 44.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
8.79e3
  • 8.79e3
59.44
  • 59.44
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
8.85e3
  • 8.85e3
  • 9.01e3
59.12
  • 59.12
  • 58.41
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
8.92e3
  • 8.92e3
58.83
  • 58.83
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
9.18e3
  • 9.18e3
57.61
  • 57.61
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
9.46e3
  • 9.46e3
  • 1.11e4
  • 1.17e4
56.34
  • 56.34
  • 48.88
  • 45.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
9.57e3
  • 9.57e3
55.83
  • 55.83
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
9.65e3
  • 9.65e3
55.46
  • 55.46
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0007221neonate stage
  • UBERON:0018685nursing stage
9.70e3
  • 9.70e3
  • 1.33e4
55.21
  • 55.21
  • 38.71
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
9.71e3
  • 9.71e3
  • 1.06e4
  • 1.14e4
55.17
  • 55.17
  • 51.21
  • 47.26
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.03e4
  • 1.03e4
52.63
  • 52.63
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.07e4
  • 1.07e4
50.45
  • 50.45
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.09e4
  • 1.09e4
49.85
  • 49.85
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
1.11e4
  • 1.11e4
48.94
  • 48.94
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.11e4
  • 1.11e4
  • 1.26e4
48.89
  • 48.89
  • 41.76
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.16e4
  • 1.16e4
46.61
  • 46.61
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.23e4
  • 1.23e4
43.03
  • 43.03
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSMODG00000018331.

Cross-references

EnsemblENSMODG00000018331 (SEC22A)
HGNCHGNC:20260 (SEC22A)
Uniprot/SPTREMBLF6PSR4, F6PSR4_MONDO

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