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M. domestica Gene: FXR1 - ENSMODG00000021294 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000021294
NameFXR1
Descriptionfragile X mental retardation, autosomal homolog 1 [Source:HGNC Symbol;Acc:HGNC:4023]
OrganismMonodelphis domestica (opossum)
Orthologs(s)19 orthologs
Paralog(s)280 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000018spermatid
  • UBERON:0018241prime adult stage
222
  • 222
98.98
  • 98.98
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
227
  • 227
  • 308
  • 370
98.96
  • 98.96
  • 98.58
  • 98.30
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
269
  • 269
98.76
  • 98.76
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
406
  • 406
98.13
  • 98.13
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
780
  • 780
  • 834
  • 1.26e3
96.41
  • 96.41
  • 96.15
  • 94.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
852
  • 852
  • 1.26e3
  • 1.32e3
96.07
  • 96.07
  • 94.20
  • 93.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
930
  • 930
95.71
  • 95.71
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
932
  • 932
  • 1.05e3
95.70
  • 95.70
  • 95.15
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
946
  • 946
  • 1.69e3
  • 1.80e3
95.64
  • 95.64
  • 92.21
  • 91.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
1.02e3
  • 1.02e3
95.27
  • 95.27
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.16e3
  • 1.16e3
94.66
  • 94.66
AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
1.48e3
  • 1.48e3
93.19
  • 93.19
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.48e3
  • 1.48e3
  • 2.00e3
93.17
  • 93.17
  • 90.76
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
1.74e3
  • 1.74e3
  • 1.87e3
91.99
  • 91.99
  • 91.35
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.92e3
  • 1.92e3
91.16
  • 91.16
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.92e3
  • 1.92e3
91.15
  • 91.15
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.96e3
  • 1.96e3
  • 2.77e3
90.96
  • 90.96
  • 87.20
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.98e3
  • 1.98e3
90.88
  • 90.88
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
2.37e3
  • 2.37e3
89.07
  • 89.07
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
2.39e3
  • 2.39e3
  • 2.50e3
  • 2.73e3
88.99
  • 88.99
  • 88.45
  • 87.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
2.74e3
  • 2.74e3
87.36
  • 87.36
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
2.83e3
  • 2.83e3
86.93
  • 86.93
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSMODG00000021294.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Metazoa2 genesCompare expression
Eukaryota280 genesCompare expression

Paralogy information comes from OMA : ENSMODG00000021294.

Cross-references

EnsemblENSMODG00000021294 (FXR1)
HGNCHGNC:4023 (FXR1)
Uniprot/SPTREMBLF7G3V5, F7G3V5_MONDO

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